Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 0.0e+00 1179.9 691 100.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.1e-80 303.5 745 39.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 8.3e-65 252.7 603 33.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.1e-64 252.3 670 32.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 8.9e-59 232.6 667 31.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 5.7e-58 229.9 667 30.4
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.4e-56 223.4 631 31.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 9.2e-56 222.6 640 31.6
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.5e-55 220.3 668 29.8
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 7.3e-53 213.0 677 30.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-50 205.7 659 31.1
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 8.3e-49 199.5 640 28.6
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.2e-47 195.7 259 48.3
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.9e-46 190.7 663 29.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.8e-44 184.5 668 33.5
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.6e-44 184.1 664 29.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.3e-43 181.4 670 27.6
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.1e-43 181.0 664 27.7
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 8.9e-43 179.5 665 26.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 8.9e-43 179.5 665 27.5
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.5e-42 178.7 667 27.3
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.5e-42 178.7 667 26.4
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.7e-41 175.3 660 27.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.4e-41 173.3 664 27.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.4e-40 172.2 660 27.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.4e-40 172.2 663 26.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.4e-40 171.4 657 26.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.2e-40 171.0 651 26.1
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.1e-40 170.6 673 27.6
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.1e-40 170.6 637 27.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 7.0e-40 169.9 650 26.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 9.2e-40 169.5 668 26.0
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.6e-39 168.7 674 27.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.6e-39 168.7 637 28.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.1e-39 168.3 676 27.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.7e-39 167.9 663 27.5
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.6e-39 167.2 635 26.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 7.8e-39 166.4 652 26.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.3e-38 165.6 651 26.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.3e-38 164.9 669 26.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 5.1e-38 163.7 673 27.6
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 5.1e-38 163.7 661 26.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 6.6e-38 163.3 670 28.1
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.6e-38 162.9 670 27.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.9e-37 161.8 674 27.0
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.5e-37 161.4 650 26.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.6e-37 160.2 667 27.0
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 5.6e-37 160.2 682 26.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 7.3e-37 159.8 670 26.7
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.3e-37 159.8 665 25.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.6e-36 158.7 669 26.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.1e-36 158.3 663 25.5
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.7e-36 157.1 633 25.4
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.2e-36 156.8 665 26.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.2e-36 156.8 658 27.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.4e-35 155.6 646 28.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 3.1e-35 154.5 672 28.4
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 5.2e-35 153.7 321 37.7
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 6.8e-35 153.3 503 27.2
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.9e-35 152.9 498 28.5
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.9e-35 152.9 498 28.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 8.9e-35 152.9 501 26.9
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-34 152.5 636 25.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-34 152.5 661 26.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.5e-34 152.1 667 25.9
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 7.5e-34 149.8 677 28.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 9.9e-34 149.4 667 23.5
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 9.9e-34 149.4 674 25.1
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.9e-33 147.9 685 24.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.7e-33 147.5 500 26.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.9e-33 147.1 633 26.1
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 4.9e-33 147.1 646 25.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 4.9e-33 147.1 646 25.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 4.9e-33 147.1 663 28.1
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 8.3e-33 146.4 668 24.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 8.3e-33 146.4 661 26.2
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-32 146.0 662 28.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.1e-32 146.0 673 25.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-32 146.0 661 28.1
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-32 146.0 501 26.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.4e-32 145.6 643 24.9
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 4.1e-32 144.1 661 26.0
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.1e-32 143.3 667 29.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 9.2e-32 142.9 677 25.7
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.6e-31 142.1 508 35.2
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.7e-31 141.4 668 24.4
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 2.7e-31 141.4 510 26.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 3.5e-31 141.0 667 24.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.0e-30 137.9 664 27.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-29 135.6 664 24.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 3.3e-29 134.4 665 24.7
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.3e-29 134.0 509 24.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 9.6e-29 132.9 514 32.7
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.1e-28 131.7 557 27.3
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.7e-28 130.6 501 25.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.7e-28 130.6 501 25.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.2e-28 130.2 672 25.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.1e-27 129.4 215 39.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-27 129.4 471 27.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.1e-27 129.4 638 22.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-27 129.0 672 25.1
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.8e-27 128.6 672 25.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.4e-27 128.3 672 25.3
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.1e-27 127.9 673 25.4
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.6e-26 123.2 658 25.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 4.9e-25 120.6 668 25.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 4.9e-25 120.6 661 22.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.1e-24 119.4 117 53.0
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.4e-24 118.2 309 32.7
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.4e-24 118.2 120 50.8
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 9.3e-24 116.3 117 52.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.5e-23 114.4 119 47.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 3.5e-23 114.4 133 45.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 7.8e-23 113.2 145 44.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.3e-22 112.5 119 47.1
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.3e-22 112.5 630 23.3
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 6.6e-22 110.2 514 23.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.7e-22 109.8 117 52.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 2.5e-21 108.2 119 47.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 7.3e-21 106.7 148 42.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 9.6e-21 106.3 120 45.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 9.6e-21 106.3 119 47.9
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.3e-20 105.9 146 38.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.3e-20 105.9 144 40.3
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 3.6e-20 104.4 661 24.7
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.6e-20 104.4 175 37.1
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.8e-19 102.1 119 47.1
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.2e-18 99.4 88 58.0
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-18 99.0 117 46.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.9e-18 96.3 88 55.7
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.7e-17 95.5 76 59.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.1e-16 90.1 229 31.0
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 9.3e-16 89.7 661 22.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-15 89.4 94 50.0
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.6e-15 89.0 233 31.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 4.6e-15 87.4 227 29.5
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 7.8e-15 86.7 346 26.3
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.0e-14 84.7 167 31.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.0e-11 74.3 154 31.2
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.5e-10 70.9 66 45.5
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.9e-10 69.7 230 27.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.3e-09 69.3 105 39.0
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.4e-08 65.9 75 40.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 7.1e-08 63.5 66 43.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.5e-07 61.2 227 26.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.0e-07 60.5 66 43.9
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 1.0e-06 59.7 65 38.5
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.0e-06 59.7 118 34.7
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.3e-06 59.3 130 30.0
Aa31LG9G14140 Aethionema arabicum HOM05D001605 ORTHO05D003014 3.9e-06 57.8 118 33.9


User provided reference genes

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