Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 3.6e-180 634.8 326 100.0
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 2.1e-95 353.2 249 69.9
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.7e-92 343.6 253 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.6e-90 337.0 240 69.2
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.7e-84 317.0 268 61.9
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.2e-84 316.6 264 60.2
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.4e-83 313.9 245 64.9
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.1e-82 310.1 239 64.4
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.7e-82 309.7 239 64.0
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.7e-82 309.7 239 63.6
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.6e-82 308.9 262 59.2
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 6.0e-82 308.5 237 65.4
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 7.8e-82 308.1 244 64.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.0e-81 307.8 228 65.8
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.0e-81 307.8 237 64.6
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.0e-81 307.8 228 67.1
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.3e-81 307.4 242 62.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.7e-81 307.0 226 66.4
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-81 307.0 239 63.6
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 3.0e-81 306.2 236 65.3
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 3.9e-81 305.8 244 63.1
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 5.1e-81 305.4 222 66.2
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.1e-80 304.3 243 61.3
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.9e-80 303.5 240 62.1
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.3e-80 302.8 246 63.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 3.3e-80 302.8 244 61.1
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.3e-80 302.8 243 60.9
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 5.6e-80 302.0 228 63.2
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 5.6e-80 302.0 242 61.2
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 5.6e-80 302.0 257 58.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 9.6e-80 301.2 238 64.3
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 9.6e-80 301.2 256 58.6
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.6e-79 300.4 242 61.2
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 2.1e-79 300.1 250 58.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.8e-79 299.7 240 61.7
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 3.6e-79 299.3 245 60.8
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.6e-79 299.3 238 62.6
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 4.7e-79 298.9 227 65.6
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 4.7e-79 298.9 231 64.5
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 6.2e-79 298.5 248 59.7
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 6.2e-79 298.5 244 61.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 6.2e-79 298.5 240 62.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 8.1e-79 298.1 248 59.7
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 8.1e-79 298.1 267 58.1
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.1e-78 297.7 225 64.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.4e-78 297.4 248 60.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.4e-78 296.6 233 63.1
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 4.0e-78 295.8 267 56.9
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.2e-77 294.3 220 65.0
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.2e-77 294.3 221 65.2
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.2e-77 294.3 247 58.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.5e-77 293.9 246 61.0
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.5e-77 293.9 248 61.3
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.6e-77 293.1 248 56.5
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 4.4e-77 292.4 232 60.8
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 5.8e-77 292.0 240 60.0
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.8e-77 292.0 251 57.0
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.3e-76 290.8 221 64.3
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.3e-76 290.8 232 62.1
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.3e-76 290.8 247 59.9
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.7e-76 290.4 249 59.4
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.7e-76 290.4 240 58.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.7e-76 290.4 238 63.0
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.2e-76 290.0 223 61.4
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.2e-76 290.0 221 64.3
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.9e-76 289.7 223 62.3
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.9e-76 289.7 255 58.0
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.8e-76 289.3 221 63.3
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.8e-76 289.3 216 64.8
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 3.8e-76 289.3 232 58.6
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.8e-76 289.3 221 62.9
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.9e-76 288.9 240 59.6
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 6.4e-76 288.5 255 57.6
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 6.4e-76 288.5 230 62.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 6.4e-76 288.5 239 60.7
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 8.4e-76 288.1 239 60.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 8.4e-76 288.1 220 63.2
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 8.4e-76 288.1 230 60.0
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 8.4e-76 288.1 221 63.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.4e-75 287.3 246 59.8
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.9e-75 287.0 247 57.1
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 2.4e-75 286.6 231 60.6
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 2.4e-75 286.6 227 61.7
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 5.4e-75 285.4 227 61.2
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 9.3e-75 284.6 263 55.1
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.6e-74 283.9 222 62.2
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 4.6e-74 282.3 269 55.4
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 4.6e-74 282.3 245 58.8
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.0e-73 281.2 294 51.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.3e-73 280.8 229 60.7
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.3e-73 280.0 234 59.4
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.9e-73 279.3 232 59.1
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 8.7e-73 278.1 311 48.9
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 2.5e-72 276.6 220 61.8
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 8.1e-71 271.6 216 61.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.4e-70 270.8 196 69.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 2.4e-70 270.0 244 57.4
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.2e-69 267.7 216 63.9
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.6e-69 266.5 233 60.9
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 3.3e-64 249.6 196 63.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 8.1e-63 245.0 204 61.3
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.2e-61 241.1 233 54.1
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 5.5e-59 232.3 226 54.9
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.3e-57 226.9 223 51.6
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.9e-56 223.8 170 63.5
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 6.2e-55 218.8 205 55.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 2.2e-52 210.3 231 48.9
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.4e-51 207.6 216 51.4
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.6e-47 194.1 247 42.9
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.4e-46 190.3 138 65.2
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.8e-39 166.8 218 41.7
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.0e-33 148.3 144 52.8
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.6e-26 124.4 113 52.2
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 5.7e-24 115.9 81 67.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 6.3e-23 112.5 136 47.8
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 7.7e-21 105.5 83 62.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.2e-18 98.2 70 65.7
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 6.3e-15 85.9 63 65.1
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.2e-13 81.6 57 63.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 7.7e-13 79.0 57 63.2
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.7e-12 77.8 66 54.5
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 3.8e-12 76.6 99 46.5
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.5e-11 74.7 61 59.0
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 4.2e-11 73.2 53 64.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.1e-10 70.9 64 53.1
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 2.7e-10 70.5 173 29.5
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 4.7e-10 69.7 48 64.6
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.2e-08 65.1 53 58.5
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 4.8e-07 59.7 48 54.2
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.4e-06 56.2 170 31.8


User provided reference genes

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