Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 2.0e-85 318.9 144 100.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 4.4e-37 158.3 81 84.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.4e-35 153.3 123 59.3
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 7.1e-35 151.0 90 70.0
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.2e-34 150.2 86 74.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.6e-34 149.8 90 68.9
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.1e-34 149.4 81 76.5
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.7e-34 149.1 86 72.1
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 2.7e-34 149.1 82 75.6
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 4.6e-34 148.3 87 71.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 4.6e-34 148.3 140 52.1
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 7.8e-34 147.5 87 72.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.0e-33 147.1 87 72.4
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.0e-33 147.1 87 72.4
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.0e-33 147.1 87 72.4
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.3e-33 146.7 85 71.8
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.3e-33 146.7 85 72.9
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.7e-33 146.4 151 51.7
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.7e-33 146.4 104 62.5
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.7e-33 146.4 81 75.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.7e-33 146.4 101 64.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 2.3e-33 146.0 86 72.1
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.3e-33 146.0 87 69.0
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.0e-33 145.6 109 60.6
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.0e-33 145.6 87 71.3
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.9e-33 145.2 81 74.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 3.9e-33 145.2 82 73.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 5.1e-33 144.8 104 61.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.1e-33 144.8 81 75.3
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 5.1e-33 144.8 90 66.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 5.1e-33 144.8 88 69.3
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 5.1e-33 144.8 137 49.6
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 6.6e-33 144.4 90 66.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 6.6e-33 144.4 87 72.4
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 8.6e-33 144.1 81 74.1
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 8.6e-33 144.1 99 62.6
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.1e-32 143.7 85 69.4
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.1e-32 143.7 81 72.8
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.5e-32 143.3 86 69.8
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-32 143.3 85 70.6
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.9e-32 142.9 81 71.6
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.9e-32 142.9 85 70.6
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.9e-32 142.9 85 70.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.9e-32 142.9 81 72.8
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.5e-32 142.5 79 75.9
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 3.3e-32 142.1 86 68.6
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.3e-32 142.1 96 63.5
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 4.3e-32 141.7 84 71.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.6e-32 141.4 80 72.5
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 5.6e-32 141.4 81 72.8
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.6e-32 141.4 85 70.6
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 5.6e-32 141.4 80 70.0
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.6e-32 141.4 102 62.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 7.3e-32 141.0 90 65.6
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 7.3e-32 141.0 118 56.8
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 7.3e-32 141.0 86 68.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 9.5e-32 140.6 86 67.4
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 9.5e-32 140.6 139 49.6
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 9.5e-32 140.6 81 71.6
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 9.5e-32 140.6 81 71.6
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 9.5e-32 140.6 81 72.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.6e-31 139.8 84 70.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.6e-31 139.8 84 70.2
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.6e-31 139.8 81 70.4
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.6e-31 139.8 86 68.6
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.6e-31 139.8 80 71.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-31 139.4 89 66.3
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 2.1e-31 139.4 88 63.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.7e-31 138.3 80 71.2
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 8.1e-31 137.5 81 72.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.4e-30 136.7 94 61.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 3.1e-30 135.6 136 52.2
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 4.0e-30 135.2 81 70.4
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.0e-30 135.2 81 69.1
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 8.9e-30 134.0 86 65.1
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-29 133.7 128 50.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.0e-29 132.9 104 56.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 3.4e-29 132.1 71 78.9
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 4.4e-29 131.7 103 58.3
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 2.2e-28 129.4 132 48.5
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 2.2e-28 129.4 87 63.2
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 3.8e-28 128.6 95 61.1
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 1.1e-24 117.1 80 63.8
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 6.2e-23 111.3 158 38.0
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 8.1e-23 110.9 159 37.7
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 6.9e-22 107.8 158 37.3
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 1.9e-19 99.8 55 72.7
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 6.0e-18 94.7 51 74.5
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 2.3e-17 92.8 51 74.5
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 3.9e-17 92.0 51 72.5
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.9e-16 89.7 52 71.2
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 9.0e-14 80.9 88 44.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 34.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.6e-07 60.1 86 33.7
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 2.1e-07 59.7 34 61.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.8e-07 59.3 80 35.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.7e-07 58.9 86 32.6
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 4.8e-07 58.5 77 36.4
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 6.2e-07 58.2 84 33.3
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 6.2e-07 58.2 37 62.2
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 2.4e-06 56.2 29 75.9
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.1e-06 55.8 96 31.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.1e-06 55.8 86 33.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 3.1e-06 55.8 87 31.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.0e-06 55.5 79 32.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.0e-06 55.5 79 32.9
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 6.9e-06 54.7 79 30.4
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 6.9e-06 54.7 85 32.9
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 6.9e-06 54.7 80 33.8
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 9.0e-06 54.3 37 56.8


User provided reference genes

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