Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.2e-167 591.3 298 100.0
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.9e-82 310.1 204 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.1e-81 306.6 220 70.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.5e-79 299.7 202 72.8
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.3e-79 298.9 209 68.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.8e-77 293.5 202 71.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 3.1e-77 292.7 202 70.8
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.1e-77 292.7 214 69.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.1e-77 292.4 202 70.3
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 6.9e-77 291.6 199 69.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 5.9e-76 288.5 202 69.3
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 7.7e-76 288.1 202 69.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 7.7e-76 288.1 244 59.8
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-75 287.7 202 69.8
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.3e-75 287.3 200 69.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.7e-75 287.0 200 71.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.7e-75 287.0 198 71.2
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.0e-75 285.4 198 70.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 5.0e-75 285.4 202 69.3
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.5e-75 284.6 202 68.8
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 8.5e-75 284.6 233 62.7
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 8.5e-75 284.6 200 70.5
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.5e-75 284.6 210 67.1
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.1e-74 284.3 229 64.2
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.4e-74 283.9 237 62.0
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.9e-74 283.5 200 71.0
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.5e-74 283.1 205 67.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.2e-74 282.7 214 65.9
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.2e-74 282.3 200 71.0
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.5e-74 282.0 199 70.9
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.5e-74 282.0 199 70.9
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.5e-74 282.0 215 63.7
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 5.5e-74 282.0 200 69.5
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.2e-74 281.6 202 67.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.4e-74 281.2 201 68.2
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.4e-74 281.2 201 68.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 9.4e-74 281.2 195 70.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.2e-73 280.8 200 70.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.2e-73 280.8 200 67.5
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.6e-73 280.4 214 65.4
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.6e-73 280.4 212 66.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-73 280.0 201 68.2
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.1e-73 280.0 218 66.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.1e-73 280.0 203 70.0
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-73 279.6 215 65.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 2.7e-73 279.6 212 66.0
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.7e-73 279.6 199 70.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.7e-73 279.6 200 67.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.7e-73 279.6 202 68.3
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.6e-73 279.3 215 65.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.6e-73 279.3 215 65.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.6e-73 279.3 225 61.8
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.6e-73 278.9 201 68.7
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 6.1e-73 278.5 200 70.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 6.1e-73 278.5 200 70.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 7.9e-73 278.1 212 65.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 7.9e-73 278.1 202 70.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 7.9e-73 278.1 209 66.0
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 7.9e-73 278.1 201 68.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-72 277.3 200 68.5
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.4e-72 277.3 217 65.0
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.8e-72 276.9 200 68.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.8e-72 276.9 225 61.8
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.3e-72 276.6 213 65.7
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.3e-72 276.6 203 67.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 3.0e-72 276.2 207 66.2
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.0e-72 276.2 200 67.0
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.0e-72 276.2 200 67.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 3.0e-72 276.2 202 65.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.9e-72 275.8 200 68.0
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 3.9e-72 275.8 208 65.4
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.7e-72 275.0 203 67.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 6.7e-72 275.0 203 69.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 8.8e-72 274.6 205 65.9
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.6e-71 273.1 198 67.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.3e-71 272.7 203 67.0
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 4.3e-71 272.3 204 66.2
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 5.7e-71 271.9 202 66.8
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 5.7e-71 271.9 259 54.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 9.7e-71 271.2 203 65.5
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-70 270.8 206 65.5
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.3e-70 270.8 245 57.1
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.3e-70 270.8 211 67.8
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.7e-70 270.4 206 65.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.7e-70 270.4 197 67.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.7e-70 270.4 202 66.8
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.2e-70 270.0 203 65.5
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.2e-70 270.0 203 65.5
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.8e-70 269.6 200 67.0
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.8e-70 269.6 202 63.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.7e-70 269.2 203 67.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.8e-70 268.9 203 67.0
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.8e-70 268.9 217 63.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.8e-70 268.9 197 69.0
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 8.2e-70 268.1 206 65.0
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-69 267.3 184 71.2
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.8e-69 266.9 227 61.7
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.4e-69 266.5 198 67.2
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.1e-69 266.2 202 62.9
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 4.1e-69 265.8 201 64.2
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 9.1e-69 264.6 202 62.9
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.6e-68 263.1 192 67.7
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.4e-68 262.7 198 67.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 5.9e-68 261.9 192 67.2
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.3e-67 260.8 186 70.4
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.3e-67 260.8 193 68.9
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.9e-67 259.6 186 68.3
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.0e-67 258.8 192 67.2
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 8.5e-67 258.1 193 67.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.1e-66 257.7 197 62.9
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.4e-66 257.3 192 67.2
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.5e-66 256.5 193 67.4
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.2e-66 255.8 191 66.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.1e-65 253.4 250 50.4
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.7e-64 248.4 219 59.8
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.3e-62 241.9 177 67.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 4.1e-61 239.2 207 58.5
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 7.0e-61 238.4 172 70.3
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 9.1e-61 238.0 177 67.2
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.5e-60 235.7 178 66.3
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.5e-60 235.7 208 57.2
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 7.2e-58 228.4 207 55.6
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.8e-56 223.8 173 64.2
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 8.8e-56 221.5 182 63.2
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.2e-54 216.9 197 57.9
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.7e-54 216.1 184 63.6
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.5e-52 209.5 165 64.2
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.5e-52 209.5 165 64.2
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.5e-50 204.1 202 53.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 3.4e-47 193.0 132 72.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 9.1e-45 184.9 185 54.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.5e-43 178.7 198 47.5
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 4.2e-42 176.0 190 51.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.6e-41 174.1 181 50.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.4e-40 171.0 203 49.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.8e-40 168.7 101 80.2
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 2.6e-39 166.8 222 45.5
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 5.9e-36 155.6 105 69.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 6.1e-33 145.6 88 78.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-31 141.4 86 76.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 4.6e-28 129.4 221 39.4
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.1e-26 124.8 188 38.3
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-25 120.6 212 39.2
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.8e-23 112.5 191 35.6
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 7.5e-23 112.1 217 35.0
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-22 110.5 70 75.7
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.4e-22 109.0 193 36.3
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.6e-20 104.4 220 34.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.4e-13 81.3 88 48.9
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.2e-13 80.1 77 54.5
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.0e-11 75.1 111 42.3
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.8e-08 64.3 43 67.4
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 6.8e-08 62.4 84 41.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 8.4e-06 55.5 65 47.7


User provided reference genes

Program Settings