Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 0.0e+00 1216.4 610 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.1e-144 516.9 536 51.7
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.0e-130 469.2 618 46.6
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 3.6e-128 463.0 617 46.0
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 2.0e-107 394.0 535 42.8
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 5.9e-107 392.5 535 41.7
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 3.6e-104 383.3 526 41.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 4.7e-104 382.9 544 39.2
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 6.1e-104 382.5 526 40.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 6.1e-104 382.5 571 40.1
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.0e-103 381.7 541 39.7
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.0e-103 381.7 526 41.1
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.4e-103 381.3 540 40.4
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.8e-103 380.9 552 39.3
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.3e-103 380.6 530 40.2
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 3.0e-103 380.2 526 40.7
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 4.0e-103 379.8 534 41.6
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 6.8e-103 379.0 526 40.9
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.8e-103 379.0 541 39.6
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.8e-103 378.6 541 39.7
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.2e-102 378.3 523 41.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 3.4e-102 376.7 523 40.0
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.4e-102 376.3 519 39.1
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 5.7e-102 375.9 529 38.8
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 9.8e-102 375.2 526 40.3
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.3e-101 374.8 555 37.7
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.7e-101 374.4 540 39.6
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 2.2e-101 374.0 522 40.2
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 3.7e-101 373.2 521 39.2
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 4.8e-101 372.9 527 40.4
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 8.3e-101 372.1 525 40.0
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 1.1e-100 371.7 529 39.9
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.1e-100 371.7 527 40.4
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.4e-100 371.3 531 38.2
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.4e-100 371.3 537 40.6
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 1.8e-100 370.9 533 40.2
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 3.1e-100 370.2 532 40.8
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 4.1e-100 369.8 526 38.2
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 4.1e-100 369.8 546 39.6
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 7.0e-100 369.0 528 37.7
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.2e-99 368.2 525 38.5
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.5e-99 366.7 526 38.0
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.9e-99 365.9 528 37.5
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 7.7e-99 365.5 528 40.3
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 7.7e-99 365.5 581 38.0
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.0e-98 365.2 532 40.4
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.0e-98 365.2 529 39.9
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.3e-98 364.8 530 38.5
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-98 364.4 537 40.2
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.9e-98 363.6 531 40.3
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 5.0e-98 362.8 540 39.1
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 6.5e-98 362.5 530 40.8
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 6.5e-98 362.5 531 40.1
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.5e-98 362.5 528 37.5
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 8.5e-98 362.1 573 37.3
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 8.5e-98 362.1 526 39.7
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.1e-97 361.7 532 38.0
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.5e-97 360.5 524 39.7
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.2e-97 360.1 552 39.7
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.2e-97 359.8 563 36.6
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.2e-96 358.2 545 38.7
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.2e-96 358.2 526 39.9
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.6e-96 357.8 538 38.5
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.6e-96 357.8 531 39.9
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.6e-96 357.8 532 38.5
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 2.1e-96 357.5 529 38.4
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 2.7e-96 357.1 538 38.5
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 2.7e-96 357.1 531 39.2
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 3.6e-96 356.7 562 36.8
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 4.7e-96 356.3 521 38.0
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 6.1e-96 355.9 561 38.5
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.8e-95 354.4 520 38.3
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 2.3e-95 354.0 527 39.1
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 4.0e-95 353.2 522 38.5
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 6.8e-95 352.4 537 39.5
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.5e-94 351.3 536 38.8
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 1.5e-94 351.3 538 37.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.4e-94 350.1 531 36.9
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 5.7e-94 349.4 530 37.0
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 5.7e-94 349.4 521 38.6
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 7.5e-94 349.0 535 40.0
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-93 347.8 546 38.6
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.7e-93 346.7 567 38.1
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 7.0e-92 342.4 530 37.4
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.6e-91 341.3 525 36.4
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 3.5e-91 340.1 530 37.9
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.0e-90 338.6 582 36.9
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 1.3e-90 338.2 534 38.0
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.3e-90 337.4 527 36.8
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 5.0e-90 336.3 528 37.1
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.3e-89 333.2 519 36.4
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 4.7e-88 329.7 550 36.0
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 6.1e-88 329.3 532 37.0
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 5.2e-87 326.2 529 36.5
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 8.9e-87 325.5 533 36.2
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 2.0e-86 324.3 542 35.2
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 5.7e-86 322.8 501 37.3
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.2e-85 320.9 534 35.4
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 8.3e-85 318.9 507 38.3
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 4.1e-84 316.6 527 38.0
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.0e-82 312.0 502 36.1
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.3e-82 311.6 668 33.1
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 4.9e-77 293.1 551 35.0
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 6.4e-77 292.7 440 36.8
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 8.3e-77 292.4 542 35.2
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 8.3e-77 292.4 689 30.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 9.2e-76 288.9 537 35.8
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.1e-73 282.0 415 38.6
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.8e-71 274.6 473 36.4
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.1e-67 261.2 343 42.6
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 6.6e-66 256.1 530 32.8
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.6e-62 244.2 716 29.3
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 2.4e-60 237.7 329 42.9
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.3e-58 231.9 408 38.0
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.1e-57 228.8 372 39.8
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.5e-57 227.6 348 40.5
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.4e-52 211.1 164 55.5
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.4e-52 209.9 164 55.5
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 5.3e-47 193.4 355 36.1
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.1e-44 185.7 141 57.4
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 3.9e-42 177.2 410 34.4
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.5e-41 175.3 369 33.3
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.1e-39 169.1 161 49.1
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.2e-38 165.6 408 30.1
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.6e-35 155.2 125 54.4
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.7e-34 149.8 232 35.8
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.0e-30 138.3 190 36.3
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.6e-30 137.9 109 55.0
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 2.6e-30 137.9 127 52.0
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.3e-29 135.6 125 48.8
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 7.4e-25 119.8 191 35.6
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 4.8e-24 117.1 97 54.6
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 8.2e-24 116.3 355 26.2
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.2e-20 104.4 92 51.1
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.3e-16 92.4 124 41.1
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.6e-11 74.3 108 37.0
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 4.6e-11 73.9 117 39.3
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.0e-10 72.8 89 44.9
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.8e-10 72.0 52 55.8
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.3e-10 71.6 87 39.1
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 6.7e-10 70.1 88 45.5
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.7e-09 67.0 86 39.5
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.4e-09 66.6 84 41.7
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.7e-08 65.5 106 36.8
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 3.7e-08 64.3 118 32.2
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.8e-07 62.0 85 38.8
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 3.4e-06 57.8 149 26.2


User provided reference genes

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