Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 4.3e-164 581.3 294 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.0e-112 410.6 251 78.5
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.2e-110 403.7 272 71.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 6.8e-109 397.9 281 69.4
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.4e-108 395.6 274 68.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 4.4e-108 395.2 273 70.0
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.8e-108 394.0 273 69.6
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.7e-107 393.3 277 68.6
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.2e-107 392.9 273 68.9
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.2e-107 392.9 273 68.9
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.7e-107 392.1 273 69.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.7e-107 392.1 250 73.2
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 3.7e-107 392.1 250 73.2
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.9e-107 391.7 277 66.8
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 6.3e-107 391.3 273 69.2
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 6.3e-107 391.3 273 67.4
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.3e-107 391.3 273 69.6
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 8.3e-107 391.0 283 68.6
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 8.3e-107 391.0 273 66.7
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-106 390.6 273 67.8
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.4e-106 390.2 278 68.7
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.4e-106 390.2 253 74.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.8e-106 389.8 250 73.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.8e-106 389.8 250 72.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.4e-106 389.4 250 72.4
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.1e-106 389.0 278 65.1
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.1e-106 389.0 274 68.6
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.1e-106 388.7 281 68.3
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 5.4e-106 388.3 250 72.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 7.0e-106 387.9 254 72.0
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.2e-106 387.5 278 67.6
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 9.2e-106 387.5 266 68.4
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.2e-105 387.1 273 69.6
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.2e-105 387.1 272 68.8
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.2e-105 387.1 275 68.0
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.2e-105 387.1 248 73.8
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.2e-105 387.1 248 72.2
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.6e-105 386.7 272 69.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.6e-105 386.7 248 70.6
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.6e-105 386.7 252 72.2
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.0e-105 386.3 271 67.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.0e-105 386.3 274 68.2
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 2.0e-105 386.3 253 71.5
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-105 386.0 278 64.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.7e-105 386.0 250 72.0
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.7e-105 386.0 274 67.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.7e-105 386.0 279 67.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 3.5e-105 385.6 279 67.0
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.5e-105 385.6 252 71.4
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.5e-105 385.6 250 72.4
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.5e-105 385.6 278 64.4
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 3.5e-105 385.6 277 68.2
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 4.5e-105 385.2 243 73.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.5e-105 385.2 272 67.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 4.5e-105 385.2 254 72.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 4.5e-105 385.2 251 70.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 5.9e-105 384.8 250 73.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 5.9e-105 384.8 253 71.5
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 7.7e-105 384.4 278 67.3
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.7e-105 384.4 267 67.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.7e-105 384.4 275 68.7
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.0e-104 384.0 250 71.6
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-104 384.0 250 72.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.0e-104 384.0 274 67.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-104 383.6 275 69.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.3e-104 383.6 278 66.5
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.7e-104 383.3 278 68.0
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.3e-104 382.9 274 67.9
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.9e-104 382.5 250 72.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.9e-104 382.5 278 66.5
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 3.8e-104 382.1 250 71.2
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 3.8e-104 382.1 278 65.8
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 3.8e-104 382.1 272 68.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.8e-104 382.1 275 67.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.8e-104 382.1 254 71.7
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 5.0e-104 381.7 248 71.8
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 5.0e-104 381.7 250 71.6
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 6.6e-104 381.3 272 68.4
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 6.6e-104 381.3 272 68.0
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 6.6e-104 381.3 276 67.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 6.6e-104 381.3 272 67.6
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.6e-104 381.3 278 65.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 8.6e-104 380.9 278 65.8
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.6e-104 380.9 275 67.6
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.6e-104 380.9 250 71.2
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 8.6e-104 380.9 250 71.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-103 380.6 250 71.6
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.5e-103 380.2 272 66.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.5e-103 380.2 272 68.0
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-103 380.2 278 65.1
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.9e-103 379.8 278 65.5
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.5e-103 379.4 250 71.2
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.5e-103 379.4 274 67.5
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.5e-103 379.4 278 65.1
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 3.3e-103 379.0 244 73.0
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.3e-103 379.0 250 71.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.3e-103 379.0 252 71.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.3e-103 379.0 250 71.2
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 4.3e-103 378.6 250 71.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 4.3e-103 378.6 272 66.9
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 9.5e-103 377.5 251 71.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-102 376.7 252 70.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.8e-102 375.9 280 64.6
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.4e-101 373.6 273 66.7
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.8e-101 373.2 243 71.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.8e-101 373.2 276 66.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.3e-101 372.9 244 71.3
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 5.2e-101 371.7 250 69.2
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 8.9e-101 370.9 244 70.5
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 9.8e-100 367.5 305 59.7
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.9e-96 355.5 288 61.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.9e-96 355.5 280 62.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 5.0e-96 355.1 232 72.0
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-95 354.0 221 73.3
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.5e-95 353.6 275 62.5
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.5e-95 352.8 263 65.4
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 4.3e-95 352.1 278 62.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 7.3e-95 351.3 272 64.3
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.8e-94 349.4 250 70.0
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.6e-94 349.0 276 64.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.6e-94 349.0 226 70.8
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 4.0e-93 345.5 221 71.0
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 8.3e-91 337.8 221 70.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 8.3e-91 337.8 281 61.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.1e-90 335.5 218 72.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.1e-90 335.5 218 72.0
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 4.6e-89 332.0 211 73.0
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.9e-87 326.6 334 52.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 8.9e-85 317.8 241 63.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 4.4e-84 315.5 200 72.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 3.1e-77 292.7 216 63.4
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.7e-75 287.0 182 73.1
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 8.4e-75 284.6 182 71.4
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.4e-74 283.9 212 64.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.2e-74 282.7 256 55.1
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.4e-69 266.5 207 62.3
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.4e-68 262.3 174 68.4
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 8.4e-67 258.1 195 66.7
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.3e-63 246.1 196 64.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 2.9e-59 233.0 152 70.4
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 7.1e-58 228.4 175 65.7
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.0e-53 211.5 146 67.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.9e-48 196.1 209 51.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.5e-44 184.1 209 50.2
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-39 167.9 158 53.2
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 2.1e-38 163.7 136 58.8
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-36 157.1 119 58.0
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.3e-32 143.7 177 45.2
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-31 141.0 105 59.0
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.1e-29 134.8 86 70.9
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 3.1e-29 133.3 301 32.6
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 5.0e-27 125.9 96 57.3
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.6e-25 119.8 174 39.7
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.8e-24 115.2 76 72.4
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.4e-20 103.2 204 34.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-19 99.8 66 71.2
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 3.8e-19 99.8 66 71.2
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 4.5e-12 76.3 53 66.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-11 75.1 49 73.5
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-11 73.2 95 43.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-10 71.6 158 31.6
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 3.6e-09 66.6 79 46.8
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 5.7e-07 59.3 92 35.9
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 7.5e-07 58.9 84 48.8
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-06 57.8 104 35.6
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.2e-06 55.5 54 59.3
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.2e-06 55.5 54 59.3


User provided reference genes

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