Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 6.3e-205 717.2 369 100.0
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 4.1e-79 299.3 333 50.2
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 8.3e-72 275.0 301 49.8
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 1.6e-70 270.8 322 45.7
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 1.2e-67 261.2 324 45.1
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 3.6e-67 259.6 325 44.6
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 6.2e-67 258.8 325 44.9
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 1.2e-65 254.6 317 44.8
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 5.8e-65 252.3 296 46.3
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 5.8e-65 252.3 296 46.6
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 9.8e-65 251.5 315 45.4
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 2.2e-64 250.4 314 43.9
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 4.9e-64 249.2 331 42.9
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 4.9e-64 249.2 322 42.9
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 4.9e-64 249.2 304 45.1
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 6.4e-64 248.8 277 48.7
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 6.4e-64 248.8 301 44.5
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 8.3e-64 248.4 299 45.8
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 1.1e-63 248.1 305 44.3
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 1.4e-63 247.7 306 43.5
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 1.4e-63 247.7 310 41.9
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 1.4e-63 247.7 320 44.4
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 1.4e-63 247.7 332 42.8
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 1.9e-63 247.3 315 42.9
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 2.4e-63 246.9 317 42.9
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 2.4e-63 246.9 322 42.9
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 2.4e-63 246.9 310 44.8
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 2.4e-63 246.9 298 45.3
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 2.4e-63 246.9 320 45.0
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 3.2e-63 246.5 326 42.9
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 7.1e-63 245.4 311 44.4
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 9.2e-63 245.0 316 42.4
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 9.2e-63 245.0 324 43.5
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 1.6e-62 244.2 309 42.1
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 2.1e-62 243.8 276 45.7
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 2.7e-62 243.4 325 41.5
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 3.5e-62 243.0 309 42.1
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 4.6e-62 242.7 320 42.8
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 4.6e-62 242.7 326 42.9
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 1.3e-61 241.1 325 41.8
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 3.9e-61 239.6 272 45.6
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 6.6e-61 238.8 317 42.6
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 6.6e-61 238.8 315 43.8
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 8.6e-61 238.4 278 44.6
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 1.5e-60 237.7 279 44.8
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 1.9e-60 237.3 274 45.3
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 1.9e-60 237.3 276 44.2
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 3.3e-60 236.5 314 43.0
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 3.3e-60 236.5 301 44.2
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 7.3e-60 235.3 307 39.7
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 7.3e-60 235.3 320 41.6
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 1.2e-59 234.6 282 43.6
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 2.1e-59 233.8 311 43.1
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 2.8e-59 233.4 283 43.1
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 1.1e-58 231.5 284 42.6
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 5.2e-58 229.2 286 42.0
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 3.4e-57 226.5 273 42.1
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 5.8e-57 225.7 263 43.7
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 7.6e-57 225.3 312 42.3
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.7e-56 224.2 278 43.5
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 3.7e-56 223.0 335 37.9
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 1.1e-55 221.5 335 37.9
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 4.1e-55 219.5 333 38.7
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 5.4e-55 219.2 309 42.7
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 2.1e-54 217.2 329 39.8
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 2.7e-54 216.9 309 40.5
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 3.5e-54 216.5 316 39.6
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 4.6e-54 216.1 328 38.1
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 8.6e-53 211.8 314 39.5
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 2.5e-52 210.3 315 39.7
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 3.3e-52 209.9 284 39.8
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 7.3e-52 208.8 240 42.5
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 1.6e-51 207.6 309 38.2
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 1.4e-50 204.5 305 38.0
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 6.8e-50 202.2 324 38.9
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 4.4e-49 199.5 279 40.5
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 1.7e-48 197.6 231 41.1
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 1.7e-48 197.6 325 40.6
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 8.4e-48 195.3 282 39.4
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 1.1e-47 194.9 310 36.8
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 2.1e-46 190.7 301 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 1.0e-45 188.3 208 47.1
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 6.6e-45 185.7 175 50.9
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.5e-44 184.5 264 40.2
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 1.3e-43 181.4 284 38.4
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 1.3e-43 181.4 309 36.2
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 6.2e-43 179.1 255 42.4
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 2.4e-42 177.2 230 42.6
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 3.1e-42 176.8 277 38.6
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 1.0e-37 161.8 230 39.6
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.3e-37 161.4 331 35.0
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 5.1e-37 159.5 151 53.6
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 8.7e-37 158.7 309 35.3
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 1.1e-36 158.3 191 46.1
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 1.1e-36 158.3 152 52.0
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 9.6e-36 155.2 242 38.0
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 4.0e-34 149.8 168 42.9
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 3.4e-33 146.7 325 33.8
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 3.4e-33 146.7 267 38.6
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 3.1e-26 123.6 250 29.6
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.0e-24 118.6 84 61.9
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 6.5e-24 115.9 194 36.6
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 1.9e-23 114.4 122 45.1
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.5e-22 110.2 164 39.6
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 1.5e-17 94.7 320 26.9
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 1.2e-14 85.1 128 33.6
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 3.0e-13 80.5 245 27.3
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 4.8e-11 73.2 70 48.6
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 4.8e-11 73.2 70 48.6


User provided reference genes

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