Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 9.7e-144 513.5 257 100.0
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.9e-62 243.4 253 51.0
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.2e-58 228.4 243 50.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.3e-57 225.3 228 51.8
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 3.4e-56 222.6 232 51.7
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.4e-54 217.2 229 49.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-54 217.2 215 51.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.4e-54 217.2 231 49.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.4e-54 216.5 227 50.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 3.2e-54 216.1 229 49.8
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 3.2e-54 216.1 229 49.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.4e-54 215.3 240 47.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.1e-54 214.9 240 46.7
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.7e-53 213.0 228 47.8
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.7e-53 213.0 228 50.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.7e-53 213.0 216 52.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.5e-53 212.6 214 52.3
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 3.5e-53 212.6 216 51.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 4.6e-53 212.2 240 45.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 4.6e-53 212.2 215 50.7
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.6e-53 212.2 227 50.2
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 4.6e-53 212.2 228 49.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.0e-53 211.8 210 50.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 7.9e-53 211.5 231 48.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 7.9e-53 211.5 210 51.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 7.9e-53 211.5 215 50.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 7.9e-53 211.5 228 48.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.0e-52 211.1 229 49.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.0e-52 211.1 228 48.7
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-52 211.1 228 49.6
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.3e-52 210.7 227 48.9
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.3e-52 210.7 215 50.2
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.8e-52 210.3 229 49.3
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.3e-52 209.9 227 49.3
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.3e-52 209.9 215 50.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.0e-52 209.5 216 51.4
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-52 209.1 255 44.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 3.9e-52 209.1 228 48.7
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.7e-52 208.4 215 49.3
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.7e-52 208.4 215 49.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 6.7e-52 208.4 227 49.3
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.7e-52 208.4 221 49.8
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.7e-52 208.0 210 50.5
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-51 207.6 213 50.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.1e-51 207.6 210 50.0
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.1e-51 207.6 215 49.3
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.5e-51 207.2 228 47.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.5e-51 207.2 231 51.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.9e-51 206.8 215 48.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.9e-51 206.8 228 47.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.9e-51 206.8 211 50.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.9e-51 206.8 230 47.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.5e-51 206.5 215 49.3
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.5e-51 206.5 213 50.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 4.3e-51 205.7 230 47.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 4.3e-51 205.7 228 48.7
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.3e-51 205.7 211 49.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.3e-51 205.7 230 48.3
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.6e-51 205.3 215 48.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.6e-51 205.3 228 48.7
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.6e-51 205.3 211 50.2
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 5.6e-51 205.3 220 50.0
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 5.6e-51 205.3 220 50.0
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 5.6e-51 205.3 228 47.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.4e-51 204.9 213 49.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 9.6e-51 204.5 225 47.6
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.6e-50 203.8 215 48.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.6e-50 203.8 211 50.2
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.1e-50 203.4 233 46.8
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.1e-50 203.4 233 46.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.1e-50 203.4 228 47.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.7e-50 202.6 213 48.8
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 4.8e-50 202.2 233 46.8
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 4.8e-50 202.2 249 45.4
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.8e-50 202.2 255 42.7
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 6.2e-50 201.8 213 48.4
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 6.2e-50 201.8 211 47.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 6.2e-50 201.8 213 48.8
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 8.1e-50 201.4 213 48.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 8.1e-50 201.4 211 48.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.1e-50 201.4 211 49.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.1e-49 201.1 211 48.8
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.4e-49 200.7 222 46.8
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.4e-49 200.7 215 47.9
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-49 200.7 215 47.4
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.4e-49 200.7 215 47.4
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.4e-49 200.7 243 46.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.4e-49 200.7 211 50.2
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.8e-49 200.3 213 48.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-49 199.9 215 48.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.4e-49 199.9 223 48.0
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.1e-49 199.5 227 47.6
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.1e-49 199.5 220 47.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 4.0e-49 199.1 211 48.3
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.0e-49 199.1 211 49.3
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.3e-49 198.7 227 46.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.0e-49 198.0 214 49.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 9.0e-49 198.0 213 47.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.5e-48 197.2 234 45.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.5e-48 197.2 227 47.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.0e-48 196.8 215 46.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.4e-48 196.1 211 47.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.4e-48 196.1 211 47.9
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.8e-48 195.3 211 47.4
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 9.9e-48 194.5 219 46.1
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.3e-47 194.1 213 46.5
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.9e-47 193.0 219 46.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.8e-47 192.6 233 45.1
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 6.4e-47 191.8 229 46.3
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.9e-46 190.3 215 47.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.2e-46 189.5 210 48.6
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.2e-46 189.1 211 47.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.1e-45 186.8 259 42.9
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.7e-45 186.4 229 47.2
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.0e-44 184.5 210 48.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.8e-44 183.7 215 44.7
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.3e-44 183.3 227 43.6
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.7e-44 181.8 212 46.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.7e-44 181.8 212 46.7
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 6.7e-44 181.8 227 44.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.1e-43 181.0 215 44.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.5e-43 180.6 237 45.1
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.9e-43 180.3 213 46.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.3e-43 179.1 180 52.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.3e-42 177.6 230 43.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.2e-42 175.3 218 45.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.3e-41 172.2 195 46.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.5e-40 170.6 211 44.1
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.0e-40 170.2 213 43.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 4.9e-39 165.6 228 43.4
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.9e-38 163.7 146 52.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.9e-36 156.0 235 40.4
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.1e-36 155.6 213 42.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 9.7e-35 151.4 239 38.9
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.1e-34 150.2 160 50.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 4.8e-34 149.1 164 46.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.7e-31 140.6 195 42.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.2e-30 136.0 161 45.3
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 6.1e-29 132.1 136 51.5
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.9e-28 129.4 231 37.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 6.7e-28 128.6 160 43.8
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.2e-26 123.6 211 35.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.3e-25 119.0 156 43.6
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 7.2e-22 108.6 114 46.5
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 3.6e-21 106.3 202 32.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.8e-20 104.0 96 49.0
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.3e-18 97.8 187 35.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.2e-18 95.1 119 42.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-16 90.9 154 36.4
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.5e-16 89.4 80 55.0
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.6e-13 79.7 107 39.3
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.3e-11 73.2 151 31.8
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 4.4e-11 72.8 91 41.8
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-09 67.8 78 44.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-09 67.8 70 50.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.1e-09 66.6 76 50.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.3e-09 65.9 81 42.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.3e-09 65.9 81 42.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.2e-08 64.7 55 56.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.0e-08 63.9 65 50.8
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.0e-08 63.9 100 39.0
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.2e-07 60.5 167 26.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.4e-06 55.1 83 39.8


User provided reference genes

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