Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 2.7e-101 372.1 201 100.0
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 2.2e-26 123.2 120 60.0
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 8.4e-18 94.7 93 58.1
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 2.4e-17 93.2 70 65.7
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 3.2e-17 92.8 70 68.6
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 3.2e-17 92.8 70 65.7
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 9.3e-17 91.3 127 48.8
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 9.3e-17 91.3 136 46.3
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 9.3e-17 91.3 71 63.4
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 1.6e-16 90.5 67 65.7
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 1.6e-16 90.5 70 64.3
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.6e-16 90.5 67 67.2
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 1.6e-16 90.5 67 67.2
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 3.5e-16 89.4 70 65.7
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 3.5e-16 89.4 111 53.2
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 6.0e-16 88.6 67 65.7
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 6.0e-16 88.6 89 55.1
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 7.8e-16 88.2 92 54.3
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 7.8e-16 88.2 70 61.4
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 1.0e-15 87.8 70 64.3
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 1.0e-15 87.8 69 62.3
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.0e-15 87.8 63 69.8
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 1.0e-15 87.8 68 63.2
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 1.7e-15 87.0 139 41.7
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 1.7e-15 87.0 114 48.2
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 2.3e-15 86.7 71 63.4
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 2.3e-15 86.7 129 46.5
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 2.3e-15 86.7 139 42.4
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 2.3e-15 86.7 103 49.5
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 3.0e-15 86.3 149 40.3
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 3.0e-15 86.3 67 62.7
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 3.9e-15 85.9 67 62.7
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.9e-15 85.9 70 61.4
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.9e-15 85.9 70 61.4
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 3.9e-15 85.9 90 53.3
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 3.9e-15 85.9 90 53.3
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 3.9e-15 85.9 63 68.3
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 3.9e-15 85.9 67 62.7
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 3.9e-15 85.9 67 62.7
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 5.1e-15 85.5 139 45.3
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 6.6e-15 85.1 67 64.2
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 6.6e-15 85.1 70 62.9
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 6.6e-15 85.1 68 61.8
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 6.6e-15 85.1 67 62.7
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 6.6e-15 85.1 91 53.8
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 8.7e-15 84.7 137 43.1
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 8.7e-15 84.7 67 62.7
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 8.7e-15 84.7 140 43.6
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.1e-14 84.3 70 65.7
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 1.9e-14 83.6 67 61.2
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 1.9e-14 83.6 67 61.2
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.9e-14 83.6 63 65.1
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.9e-14 83.6 152 42.8
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.9e-14 83.6 109 46.8
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 2.5e-14 83.2 67 61.2
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 2.5e-14 83.2 67 61.2
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 2.5e-14 83.2 67 61.2
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 3.3e-14 82.8 111 45.0
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 3.3e-14 82.8 111 45.0
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 3.3e-14 82.8 63 65.1
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 3.3e-14 82.8 91 52.7
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 3.3e-14 82.8 128 43.8
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 4.3e-14 82.4 152 38.8
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 5.6e-14 82.0 64 64.1
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 5.6e-14 82.0 139 41.7
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 7.3e-14 81.6 160 38.1
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 7.3e-14 81.6 70 61.4
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 1.3e-13 80.9 67 59.7
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 1.6e-13 80.5 128 44.5
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 2.1e-13 80.1 160 38.1
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 2.1e-13 80.1 68 57.4
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.1e-13 80.1 60 65.0
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 3.6e-13 79.3 137 42.3
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 3.6e-13 79.3 62 61.3
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 6.2e-13 78.6 67 59.7
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 1.8e-12 77.0 60 63.3
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 5.3e-12 75.5 63 58.7
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 5.3e-12 75.5 78 52.6
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 9.0e-12 74.7 62 54.8
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 1.2e-11 74.3 71 54.9
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 3.4e-11 72.8 55 61.8
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 3.4e-11 72.8 56 62.5
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 1.3e-10 70.9 125 42.4
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.3e-10 70.9 60 56.7
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.3e-10 70.9 60 56.7
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.3e-10 70.9 60 56.7
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.3e-10 70.9 60 56.7
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 2.2e-10 70.1 56 60.7
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.9e-10 69.7 60 55.0
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.4e-09 66.6 51 62.7
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 5.4e-09 65.5 126 37.3
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 7.1e-09 65.1 56 57.1
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 4.6e-08 62.4 109 41.3
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 6.0e-08 62.0 60 58.3
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.0e-07 61.2 40 70.0
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 3.0e-07 59.7 43 62.8
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 3.0e-07 59.7 40 70.0
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 6.7e-07 58.5 40 70.0
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 8.7e-07 58.2 58 56.9
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 1.1e-06 57.8 140 32.1
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 1.9e-06 57.0 40 65.0
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 4.3e-06 55.8 40 67.5
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 9.6e-06 54.7 48 54.2


User provided reference genes

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