Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 0.0e+00 1172.9 603 100.0
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 2.1e-144 516.9 612 46.1
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.3e-126 455.3 609 42.4
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.8e-125 452.6 609 42.4
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 8.1e-125 451.8 604 40.4
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.1e-124 449.9 580 42.9
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 9.0e-124 448.4 609 42.0
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 3.4e-123 446.4 608 41.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 4.4e-123 446.0 609 42.0
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 7.6e-123 445.3 604 40.7
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 9.9e-123 444.9 608 40.8
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.9e-122 443.4 604 39.9
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.9e-122 443.4 609 41.5
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.4e-121 441.0 604 40.4
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.4e-121 440.3 601 40.8
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 2.4e-121 440.3 610 41.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.2e-121 439.5 606 40.4
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 7.1e-121 438.7 610 39.8
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.2e-120 438.0 605 40.7
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.7e-120 436.8 604 40.9
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 3.5e-120 436.4 604 40.9
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 3.5e-120 436.4 588 41.0
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.0e-119 434.9 604 40.1
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.3e-119 434.5 606 39.8
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.3e-119 434.5 588 40.6
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 3.0e-119 433.3 606 39.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 3.0e-119 433.3 594 41.1
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 6.6e-119 432.2 604 40.4
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 1.5e-118 431.0 604 40.4
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.5e-118 431.0 608 39.1
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.5e-118 430.3 604 39.7
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.5e-118 430.3 607 39.7
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.5e-118 430.3 601 39.9
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 3.3e-118 429.9 605 40.7
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 3.3e-118 429.9 608 42.8
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 4.3e-118 429.5 601 40.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 5.6e-118 429.1 604 41.2
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 9.6e-118 428.3 604 39.7
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 9.6e-118 428.3 601 39.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.6e-117 427.6 604 39.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 2.1e-117 427.2 608 40.3
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.8e-117 426.8 601 39.6
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 4.8e-117 426.0 606 41.4
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 5.3e-116 422.5 604 39.1
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 5.3e-116 422.5 601 40.9
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 9.0e-116 421.8 605 38.5
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 9.0e-116 421.8 607 40.2
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.2e-115 421.4 604 39.9
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.5e-115 421.0 630 38.1
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.5e-115 421.0 603 39.5
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.9e-115 418.3 602 39.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 9.9e-115 418.3 605 40.3
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 9.9e-115 418.3 601 39.9
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 2.2e-114 417.2 607 38.7
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 8.4e-114 415.2 628 38.1
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.4e-113 414.5 604 39.1
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.4e-113 414.5 605 40.0
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.4e-113 413.7 604 39.6
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 4.2e-113 412.9 603 39.6
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 7.1e-113 412.1 606 38.1
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 9.3e-113 411.8 601 38.9
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 9.3e-113 411.8 607 38.9
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.2e-112 411.4 610 40.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 1.6e-112 411.0 599 40.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 2.1e-112 410.6 602 39.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 7.9e-112 408.7 606 39.4
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.0e-111 408.3 601 39.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 1.0e-111 408.3 605 40.5
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.8e-111 407.5 604 39.1
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 5.1e-111 406.0 607 39.2
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.5e-110 403.7 582 40.5
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 2.5e-110 403.7 620 38.2
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 2.8e-109 400.2 601 38.9
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 6.2e-109 399.1 603 38.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.4e-108 397.9 605 38.2
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.4e-108 397.1 614 38.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 6.9e-108 395.6 602 38.0
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.0e-107 394.0 604 37.9
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 4.5e-107 392.9 602 37.9
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 2.2e-106 390.6 668 35.9
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.9e-105 387.5 602 37.5
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 3.0e-103 380.2 604 37.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 3.0e-103 380.2 604 37.3
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.1e-100 371.7 604 37.4
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 9.0e-100 368.6 604 37.1
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 9.0e-100 368.6 604 37.1
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 9.0e-100 368.6 579 37.8
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.0e-99 367.5 628 35.4
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.2e-98 364.0 548 37.2
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.6e-93 347.8 562 38.4
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 6.9e-92 342.4 575 35.7
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 5.9e-91 339.3 545 38.3
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.2e-90 337.4 522 37.9
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 6.5e-90 335.9 411 44.3
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.4e-89 334.7 447 41.8
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 5.5e-89 332.8 516 37.2
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 3.0e-87 327.0 449 41.4
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.7e-85 320.1 447 38.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 9.1e-84 315.5 611 35.4
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 9.1e-84 315.5 487 38.2
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 5.9e-83 312.8 708 31.1
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 6.5e-74 282.7 378 41.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.2e-73 280.0 450 37.8
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 4.0e-71 273.5 404 38.4
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.3e-69 268.5 547 34.0
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.1e-68 263.8 324 42.6
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 7.0e-68 262.7 391 39.4
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.3e-66 258.5 507 34.9
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.4e-65 252.3 392 38.8
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.5e-57 226.5 496 33.5
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.5e-41 175.3 464 29.3
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.5e-30 138.7 300 30.7
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.1e-28 132.5 165 44.8
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.9e-28 131.7 607 25.0
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 9.5e-25 119.4 257 30.7
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 1.6e-24 118.6 100 54.0
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 8.9e-23 112.8 217 31.3
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.0e-22 111.7 360 28.1
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 6.4e-21 106.7 74 59.5
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 4.3e-17 94.0 98 49.0
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 8.1e-16 89.7 146 37.0
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 4.0e-15 87.4 173 34.1
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 1.5e-14 85.5 142 33.8
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 7.6e-14 83.2 147 34.0
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-10 70.5 56 57.1
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 3.3e-09 67.8 117 36.8
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 3.3e-09 67.8 117 36.8
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 2.1e-08 65.1 52 53.8
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.3e-07 60.5 51 54.9


User provided reference genes

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