Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.2e-24 115.5 54 100.0
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.8e-13 77.8 54 59.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 3.7e-13 77.4 53 64.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-13 77.4 53 67.9
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.9e-13 77.0 53 62.3
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.9e-13 77.0 52 61.5
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 8.3e-13 76.3 49 67.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 8.3e-13 76.3 53 62.3
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.1e-12 75.9 53 64.2
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-12 75.9 53 64.2
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-12 75.9 53 64.2
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.1e-12 75.9 53 64.2
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.4e-12 75.5 52 57.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-12 75.5 53 64.2
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.4e-12 75.5 53 64.2
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.4e-12 75.5 51 68.6
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.4e-12 75.5 51 68.6
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-12 75.5 47 70.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.8e-12 75.1 47 68.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.8e-12 75.1 50 68.0
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.8e-12 75.1 50 68.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.8e-12 75.1 50 68.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.4e-12 74.7 47 70.2
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.4e-12 74.7 50 70.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.4e-12 74.7 50 70.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.2e-12 74.3 47 68.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.2e-12 74.3 53 60.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.2e-12 74.3 50 68.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 3.2e-12 74.3 50 68.0
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-12 74.3 50 68.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-12 74.3 50 68.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.2e-12 74.3 47 70.2
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.1e-12 73.9 47 70.2
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.1e-12 73.9 53 60.4
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.1e-12 73.9 50 68.0
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.1e-12 73.9 47 66.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.1e-12 73.9 49 71.4
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.1e-12 73.9 50 62.0
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.4e-12 73.6 53 64.2
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 5.4e-12 73.6 53 60.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 7.0e-12 73.2 49 69.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 7.0e-12 73.2 53 58.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-12 73.2 49 69.4
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-12 73.2 49 69.4
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 7.0e-12 73.2 49 69.4
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 7.0e-12 73.2 47 70.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 9.2e-12 72.8 47 72.3
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.2e-11 72.4 46 67.4
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.6e-11 72.0 54 57.4
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.6e-11 72.0 53 60.4
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.0e-11 71.6 53 58.5
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.0e-11 71.6 53 58.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.0e-11 71.6 53 58.5
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.7e-11 71.2 53 58.5
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.5e-11 70.9 47 68.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 3.5e-11 70.9 53 62.3
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-11 70.9 54 59.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.5e-11 70.9 53 60.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.5e-11 70.9 49 67.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.5e-11 70.9 54 61.1
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.5e-11 70.5 53 56.6
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 4.5e-11 70.5 48 62.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 4.5e-11 70.5 44 68.2
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 4.5e-11 70.5 54 57.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 4.5e-11 70.5 53 54.7
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 4.5e-11 70.5 53 60.4
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 5.9e-11 70.1 53 60.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 5.9e-11 70.1 45 71.1
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.9e-11 70.1 45 71.1
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 5.9e-11 70.1 53 56.6
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.9e-11 70.1 45 73.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 7.8e-11 69.7 45 68.9
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 7.8e-11 69.7 47 63.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 7.8e-11 69.7 53 56.6
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 7.8e-11 69.7 50 64.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 7.8e-11 69.7 47 63.8
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.0e-10 69.3 47 59.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.0e-10 69.3 53 56.6
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.0e-10 69.3 47 61.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.0e-10 69.3 45 73.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.0e-10 69.3 45 68.9
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.3e-10 68.9 47 68.1
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-10 68.9 45 68.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.3e-10 68.9 45 66.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.3e-10 68.9 44 68.2
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-10 68.9 45 66.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.3e-10 68.9 47 63.8
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-10 68.6 44 63.6
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.7e-10 68.6 47 66.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-10 68.6 48 60.4
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 68.9
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.7e-10 68.6 45 66.7
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.7e-10 68.6 53 60.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.3e-10 68.2 48 58.3
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 2.3e-10 68.2 51 62.7
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.3e-10 68.2 53 54.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-10 67.8 45 64.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-10 67.8 53 54.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.9e-10 67.8 47 63.8
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.9e-10 67.8 51 54.9
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.9e-10 67.8 47 59.6
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 3.9e-10 67.4 48 60.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 3.9e-10 67.4 48 62.5
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 3.9e-10 67.4 48 62.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 5.0e-10 67.0 48 62.5
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.0e-10 67.0 44 70.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 60.4
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 60.4
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 60.4
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 60.4
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 60.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.6e-10 66.6 48 62.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 8.6e-10 66.2 47 63.8
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.6e-10 66.2 46 63.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-09 65.5 48 60.4
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.5e-09 65.5 47 63.8
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.5e-09 64.7 48 62.5
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 3.3e-09 64.3 44 59.1
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.3e-09 63.9 49 53.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.3e-09 63.9 52 55.8
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.3e-09 63.9 47 59.6
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 5.6e-09 63.5 47 61.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 5.6e-09 63.5 43 60.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-08 62.4 45 64.4
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.1e-08 61.6 47 55.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.7e-08 60.5 44 54.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-07 58.9 40 60.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.1e-07 57.8 37 70.3
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.1e-07 57.8 35 71.4
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 3.4e-06 54.3 43 55.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 7.5e-06 53.1 42 57.1


User provided reference genes

Program Settings