Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 3.4e-130 468.4 244 100.0
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 3.2e-48 196.1 230 52.6
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.1e-43 181.0 171 56.1
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 8.6e-41 171.4 175 52.6
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 5.5e-40 168.7 191 49.2
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 7.2e-40 168.3 209 48.3
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 8.0e-39 164.9 195 48.2
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 1.4e-38 164.1 187 46.0
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 2.3e-38 163.3 190 46.8
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 2.3e-38 163.3 190 46.8
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.0e-38 162.9 194 48.5
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 6.8e-38 161.8 188 48.4
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 8.9e-38 161.4 194 48.5
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.2e-37 161.0 191 47.1
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.5e-37 160.6 189 47.1
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 2.0e-37 160.2 192 47.4
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 4.4e-37 159.1 192 46.9
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 5.7e-37 158.7 191 45.5
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 9.8e-37 157.9 192 46.9
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.3e-36 157.5 187 47.1
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 1.3e-36 157.5 190 46.8
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 2.2e-36 156.8 166 50.0
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.2e-36 156.8 169 48.5
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 2.8e-36 156.4 188 44.7
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 3.7e-36 156.0 207 43.5
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 4.9e-36 155.6 190 48.4
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 6.3e-36 155.2 187 46.5
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 8.3e-36 154.8 188 44.7
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 8.3e-36 154.8 189 46.6
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 8.3e-36 154.8 194 44.8
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.1e-35 154.5 189 46.0
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.1e-35 154.5 190 47.9
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 1.8e-35 153.7 194 44.8
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.8e-35 153.7 192 46.4
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 1.8e-35 153.7 168 47.6
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.8e-35 153.7 191 46.1
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 3.1e-35 152.9 191 47.1
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 3.1e-35 152.9 192 46.4
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 4.1e-35 152.5 236 40.3
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 4.1e-35 152.5 186 47.8
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 4.1e-35 152.5 195 44.1
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 4.1e-35 152.5 231 41.1
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 5.4e-35 152.1 190 44.2
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 5.4e-35 152.1 161 50.9
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 5.4e-35 152.1 198 43.4
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 9.2e-35 151.4 168 47.0
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 1.2e-34 151.0 192 44.3
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.2e-34 151.0 188 45.2
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.2e-34 151.0 190 46.3
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.2e-34 151.0 190 46.3
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 2.0e-34 150.2 168 48.2
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 3.5e-34 149.4 190 44.2
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 4.5e-34 149.1 203 43.3
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 5.9e-34 148.7 169 50.3
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 5.9e-34 148.7 239 38.9
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 7.8e-34 148.3 169 47.9
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 7.8e-34 148.3 190 45.3
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 1.0e-33 147.9 191 46.1
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.0e-33 147.9 188 43.1
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 1.3e-33 147.5 190 45.8
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.3e-33 147.5 190 45.8
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 1.3e-33 147.5 208 41.8
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 1.7e-33 147.1 190 45.8
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.7e-33 147.1 240 40.0
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 2.3e-33 146.7 169 45.6
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 2.9e-33 146.4 190 46.3
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 2.9e-33 146.4 186 43.0
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 5.0e-33 145.6 190 45.8
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 6.6e-33 145.2 189 43.9
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.1e-32 144.4 162 45.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.1e-32 144.4 186 43.0
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.9e-32 143.7 186 43.5
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 3.3e-32 142.9 192 45.8
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 3.3e-32 142.9 192 42.7
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 3.3e-32 142.9 188 43.6
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 4.3e-32 142.5 159 47.2
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 4.3e-32 142.5 184 44.6
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 5.6e-32 142.1 130 55.4
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 5.6e-32 142.1 184 44.6
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 7.3e-32 141.7 130 56.9
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 2.1e-31 140.2 131 57.3
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 8.0e-31 138.3 161 49.1
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 8.0e-31 138.3 190 41.1
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.0e-30 137.9 190 40.0
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 5.2e-30 135.6 156 47.4
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.5e-29 134.0 145 49.7
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.5e-29 134.0 190 42.1
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.4e-29 132.9 185 42.2
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 1.7e-28 130.6 123 57.7
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 1.2e-26 124.4 119 54.6
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 6.6e-25 118.6 249 35.7
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 1.1e-24 117.9 188 37.8
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 5.6e-24 115.5 116 51.7
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.5e-21 107.5 259 32.8
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.2e-20 103.6 118 44.9
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.7e-20 102.8 122 45.9
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 8.3e-20 101.7 114 44.7
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.2e-19 99.8 115 44.3
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.7e-18 96.7 145 37.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 3.9e-17 92.8 124 44.4
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.6e-15 86.3 89 50.6
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 9.9e-13 78.2 95 45.3
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 1.3e-09 67.8 87 42.5
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 4.7e-07 59.3 60 56.7
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 8.1e-07 58.5 108 32.4


User provided reference genes

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