Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 7.6e-115 417.2 208 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.2e-38 164.1 140 55.7
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.2e-38 164.1 105 70.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.4e-38 162.5 163 53.4
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.4e-38 162.2 143 56.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-37 160.6 101 69.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.7e-37 160.2 159 53.5
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.7e-37 160.2 116 62.9
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.9e-37 159.5 112 66.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.7e-37 159.1 139 55.4
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.9e-37 158.7 132 59.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.9e-37 158.7 110 68.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 4.9e-37 158.7 101 67.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.9e-37 158.7 101 67.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 4.9e-37 158.7 101 67.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 6.4e-37 158.3 130 56.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 6.4e-37 158.3 110 65.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.3e-37 157.9 103 69.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 8.3e-37 157.9 101 71.3
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.1e-36 157.5 162 53.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.4e-36 157.1 99 72.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.4e-36 157.1 100 70.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-36 157.1 103 68.9
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.9e-36 156.8 99 70.7
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.9e-36 156.8 99 70.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.9e-36 156.8 108 63.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.9e-36 156.8 109 67.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.4e-36 156.4 99 69.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.4e-36 156.4 117 61.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.4e-36 156.4 99 70.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.4e-36 156.4 148 52.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.2e-36 156.0 129 60.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.2e-36 156.0 99 70.7
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.2e-36 156.0 99 70.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 3.2e-36 156.0 166 54.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.1e-36 155.6 99 69.7
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.1e-36 155.6 154 52.6
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.1e-36 155.6 153 55.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 5.4e-36 155.2 162 48.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 5.4e-36 155.2 109 65.1
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 7.1e-36 154.8 132 57.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.1e-36 154.8 99 69.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 7.1e-36 154.8 106 65.1
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 7.1e-36 154.8 152 53.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 9.2e-36 154.5 155 54.2
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 9.2e-36 154.5 101 69.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.2e-35 154.1 101 68.3
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-35 154.1 120 59.2
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.2e-35 154.1 138 57.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.6e-35 153.7 112 61.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.6e-35 153.7 112 61.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.1e-35 153.3 171 51.5
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.7e-35 152.9 130 56.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.7e-35 152.9 99 67.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.5e-35 152.5 99 67.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 3.5e-35 152.5 137 53.3
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.5e-35 152.5 99 66.7
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.6e-35 152.1 120 58.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 4.6e-35 152.1 100 66.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.6e-35 152.1 99 65.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.6e-35 152.1 130 56.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.6e-35 152.1 135 56.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.6e-35 152.1 101 66.3
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.6e-35 152.1 154 52.6
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.6e-35 152.1 99 67.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.6e-35 152.1 99 67.7
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 6.0e-35 151.8 164 51.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 6.0e-35 151.8 99 69.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 7.8e-35 151.4 117 59.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 7.8e-35 151.4 168 45.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 7.8e-35 151.4 131 57.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 7.8e-35 151.4 143 53.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-35 151.4 146 53.4
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.0e-34 151.0 169 48.5
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.0e-34 151.0 138 51.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.0e-34 151.0 170 50.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.0e-34 151.0 170 48.2
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-34 151.0 99 67.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.0e-34 151.0 144 52.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-34 150.6 99 65.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-34 150.2 158 51.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.7e-34 150.2 158 51.9
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-34 150.2 99 68.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.3e-34 149.8 135 55.6
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.3e-34 149.8 99 66.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.3e-34 149.8 138 52.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.0e-34 149.4 99 67.7
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.0e-34 149.4 158 51.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.9e-34 149.1 160 52.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 3.9e-34 149.1 156 50.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.9e-34 149.1 130 54.6
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.1e-34 148.7 156 51.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.1e-34 148.7 123 57.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 6.6e-34 148.3 137 53.3
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 8.6e-34 147.9 98 65.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 8.6e-34 147.9 99 65.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.6e-34 147.9 125 58.4
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.1e-33 147.5 154 50.0
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.5e-33 147.1 101 65.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.9e-33 146.7 158 50.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.5e-33 146.4 152 52.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.5e-33 146.4 163 48.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 5.6e-33 145.2 147 50.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-32 143.7 162 50.0
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.2e-31 138.7 82 74.4
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.2e-30 137.5 131 52.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.8e-30 135.2 158 44.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.2e-29 133.3 100 59.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 5.4e-28 128.6 86 68.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 9.2e-28 127.9 82 68.3
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 6.0e-27 125.2 145 46.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-25 120.9 99 50.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 9.6e-25 117.9 73 68.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.6e-24 115.9 177 39.0
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 4.7e-24 115.5 97 57.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.1e-23 114.4 73 64.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.0e-23 112.5 75 64.0
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 5.3e-23 112.1 71 70.4
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.0e-23 111.3 153 39.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.2e-22 110.9 94 51.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.2e-21 106.7 70 67.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.9e-21 105.5 70 68.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.9e-21 105.5 122 45.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.2e-20 102.4 90 52.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-19 98.2 80 55.0
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.3e-17 92.8 79 55.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.6e-17 92.0 82 54.9
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.6e-17 91.3 56 69.6
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.8e-16 89.0 104 42.3
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 6.2e-16 88.6 82 53.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 4.0e-15 85.9 72 59.7
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.2e-14 84.3 76 53.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.5e-14 82.4 99 44.4
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.2e-13 80.1 48 64.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.9e-13 79.7 53 66.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.4e-13 78.2 126 34.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-12 76.3 69 52.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 4.2e-12 75.9 98 41.8
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.8e-08 63.2 47 55.3
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.8e-08 62.4 114 33.3
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-06 57.8 30 73.3


User provided reference genes

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