Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.0e-78 296.6 145 100.0
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.8e-53 211.1 137 70.1
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.3e-49 199.1 137 67.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 6.0e-34 147.9 143 48.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.8e-33 146.4 144 48.6
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.3e-31 140.2 145 46.2
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-25 120.2 136 42.6
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.3e-25 120.2 144 43.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.8e-25 119.8 131 42.7
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 3.0e-25 119.0 143 39.9
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.1e-25 118.2 132 43.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 6.7e-25 117.9 142 39.4
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 6.7e-25 117.9 136 44.9
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.7e-25 117.9 136 41.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 6.7e-25 117.9 142 43.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.7e-25 117.5 132 41.7
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 8.7e-25 117.5 131 41.2
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.1e-24 117.1 134 46.3
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.5e-24 116.7 139 40.3
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.5e-24 116.7 145 42.8
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.9e-24 116.3 129 43.4
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.9e-24 116.3 130 44.6
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.9e-24 116.3 130 44.6
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.5e-24 115.9 132 41.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.5e-24 115.9 129 43.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.5e-24 115.9 139 40.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.3e-24 115.5 130 44.6
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.3e-24 115.5 144 39.6
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 3.3e-24 115.5 140 42.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.3e-24 115.5 139 40.3
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 5.6e-24 114.8 137 43.1
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 5.6e-24 114.8 132 41.7
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 5.6e-24 114.8 142 38.7
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 9.6e-24 114.0 143 41.3
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 9.6e-24 114.0 139 40.3
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.3e-23 113.6 135 40.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-23 113.6 110 48.2
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.3e-23 113.6 122 42.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.3e-23 113.6 133 42.9
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-23 113.6 132 43.2
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.3e-23 113.6 143 39.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.3e-23 113.6 132 43.2
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.3e-23 113.6 132 43.2
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.3e-23 113.6 132 40.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-23 113.2 136 40.4
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-23 113.2 109 47.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-23 113.2 109 47.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.1e-23 112.8 109 46.8
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.1e-23 112.8 132 43.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.1e-23 112.8 125 42.4
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.1e-23 112.8 132 43.2
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-23 112.8 135 43.7
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.8e-23 112.5 134 44.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-23 112.5 133 39.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.8e-23 112.5 133 39.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.8e-23 112.5 133 42.9
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.7e-23 112.1 132 42.4
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 4.8e-23 111.7 133 41.4
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 4.8e-23 111.7 133 39.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.8e-23 111.7 132 41.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 6.2e-23 111.3 138 39.1
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.2e-23 111.3 136 42.6
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 8.2e-23 110.9 140 39.3
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 8.2e-23 110.9 145 38.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 8.2e-23 110.9 147 40.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 8.2e-23 110.9 127 40.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.4e-22 110.2 136 38.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.8e-22 109.8 126 42.1
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.4e-22 109.4 134 42.5
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.4e-22 109.4 142 38.7
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.1e-22 109.0 128 39.8
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.1e-22 109.0 128 39.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.1e-22 109.0 128 39.8
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.1e-22 109.0 128 39.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 3.1e-22 109.0 132 43.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.0e-22 108.6 128 39.8
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 5.3e-22 108.2 134 43.3
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 5.3e-22 108.2 108 48.1
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 5.3e-22 108.2 134 42.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 5.3e-22 108.2 148 38.5
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 6.9e-22 107.8 144 36.8
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 6.9e-22 107.8 142 35.9
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 9.0e-22 107.5 137 39.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 9.0e-22 107.5 132 38.6
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.0e-22 107.5 139 37.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.2e-21 107.1 128 42.2
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.5e-21 106.7 129 38.8
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.5e-21 106.7 129 38.8
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.5e-21 106.7 129 38.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.5e-21 106.7 125 41.6
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.0e-21 106.3 132 40.2
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.0e-21 106.3 142 38.7
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.6e-21 105.9 122 40.2
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.6e-21 105.9 128 38.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.4e-21 105.5 136 36.8
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 4.5e-21 105.1 125 40.8
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.3e-20 103.6 138 38.4
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.3e-20 103.6 135 35.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 2.2e-20 102.8 126 45.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.9e-20 102.4 121 40.5
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.8e-20 102.1 134 38.8
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.4e-20 100.9 128 36.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 8.4e-20 100.9 134 38.1
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.4e-20 100.9 130 43.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.4e-20 100.9 130 43.8
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 8.4e-20 100.9 136 40.4
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.1e-19 100.5 138 33.3
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.4e-19 100.1 150 35.3
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 3.2e-19 99.0 131 44.3
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 4.2e-19 98.6 128 36.7
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.6e-18 96.7 131 43.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.6e-18 95.1 123 42.3
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 7.9e-18 94.4 126 40.5
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.0e-17 94.0 134 38.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.3e-17 93.6 131 37.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.9e-17 92.0 133 38.3
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 5.1e-17 91.7 115 43.5
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 5.1e-17 91.7 130 39.2
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 8.7e-17 90.9 132 37.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.5e-16 90.1 133 39.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.9e-16 89.7 143 38.5
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.5e-16 89.4 121 38.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 3.3e-16 89.0 127 37.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.7e-16 88.2 101 44.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 5.7e-16 88.2 101 43.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 5.7e-16 88.2 143 38.5
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 7.4e-16 87.8 101 44.6
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 4.8e-15 85.1 95 45.3
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.0e-13 79.7 83 44.6
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 5.9e-13 78.2 95 42.1
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 7.7e-13 77.8 109 38.5
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.0e-12 77.4 214 24.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 7.2e-11 71.2 81 39.5
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.0e-09 67.4 81 39.5
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.8e-09 66.6 211 23.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.3e-09 66.2 81 43.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 3.9e-09 65.5 85 35.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.5e-08 63.5 58 51.7
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 4.3e-08 62.0 185 27.0


User provided reference genes

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