Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 7.3e-253 876.7 429 100.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.1e-143 513.1 446 58.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 4.1e-139 498.8 420 60.7
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.4e-131 473.8 425 55.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.3e-129 467.2 434 54.8
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 8.6e-129 464.5 434 53.2
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.9e-128 463.4 422 53.6
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 7.3e-128 461.5 421 53.4
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-127 460.7 407 56.0
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 3.6e-127 459.1 407 55.5
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.2e-125 454.1 424 54.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.5e-125 453.8 437 53.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.5e-125 453.8 436 53.2
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.0e-125 453.4 437 53.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 4.4e-125 452.2 423 54.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 7.5e-125 451.4 407 54.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.3e-124 450.7 422 51.2
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.3e-124 450.7 424 52.6
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 8.3e-124 448.0 422 53.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.1e-123 447.6 437 52.9
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.1e-123 447.6 433 51.7
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 9.2e-123 444.5 424 53.8
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.6e-122 443.7 422 51.4
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 2.1e-122 443.4 425 51.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 7.8e-122 441.4 422 52.4
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.3e-121 440.7 425 52.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.7e-121 440.3 436 51.6
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 5.1e-121 438.7 444 50.9
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 6.6e-121 438.3 435 51.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.1e-120 437.6 434 51.4
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.9e-120 436.8 425 52.0
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.9e-120 436.8 424 53.8
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 5.6e-120 435.3 422 51.2
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 5.6e-120 435.3 436 51.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 7.3e-120 434.9 437 51.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.2e-119 434.1 425 50.8
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.6e-119 433.7 434 50.5
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.6e-119 433.7 433 51.7
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.1e-119 433.3 437 50.8
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 3.6e-119 432.6 434 50.9
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 4.7e-119 432.2 422 50.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 6.2e-119 431.8 435 51.7
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 2.3e-118 429.9 423 50.8
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.1e-118 429.5 437 50.6
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 3.1e-118 429.5 428 50.9
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.0e-118 429.1 388 55.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.0e-118 429.1 424 52.6
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 4.0e-118 429.1 425 51.1
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 5.2e-118 428.7 434 50.5
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 6.8e-118 428.3 424 50.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 8.9e-118 427.9 422 50.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.2e-117 427.6 426 50.5
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.6e-117 426.4 393 53.9
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 2.6e-117 426.4 422 50.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 4.4e-117 425.6 424 52.1
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.8e-117 425.2 424 51.9
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 7.5e-117 424.9 424 51.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 9.9e-117 424.5 429 52.0
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.7e-116 423.7 425 50.4
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.9e-116 422.9 341 57.2
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.7e-116 422.5 423 50.4
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 6.4e-116 421.8 397 53.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 6.4e-116 421.8 429 52.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.4e-115 419.9 422 50.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 5.4e-115 418.7 422 48.6
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.2e-115 417.9 422 50.2
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.2e-114 417.5 422 49.3
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.6e-114 417.2 461 49.2
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.1e-114 416.8 422 49.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.1e-114 416.8 422 50.2
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.6e-114 415.6 422 49.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.0e-114 415.2 462 48.7
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.0e-113 414.5 423 48.7
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.7e-113 413.7 422 48.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.3e-113 413.3 416 49.0
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.3e-113 413.3 429 49.2
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.3e-113 413.3 416 49.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.0e-113 412.9 427 50.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 8.6e-113 411.4 417 51.3
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 8.6e-113 411.4 422 49.5
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.1e-112 411.0 422 48.8
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.3e-112 409.5 439 47.8
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.3e-112 409.1 332 56.0
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 5.6e-112 408.7 423 49.6
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.7e-111 405.6 422 47.4
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.1e-110 404.4 453 47.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.4e-110 403.3 395 51.4
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.0e-110 402.5 339 58.1
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.2e-107 392.9 423 47.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 5.4e-107 392.1 486 44.0
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 7.1e-107 391.7 425 48.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.3e-105 386.7 443 49.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.3e-105 386.7 406 50.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 2.3e-105 386.7 429 49.4
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 5.6e-104 382.1 309 57.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 7.3e-104 381.7 329 56.2
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 9.6e-104 381.3 476 44.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-101 374.4 292 58.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.7e-100 370.5 345 52.8
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 3.8e-100 369.4 432 46.5
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 2.4e-99 366.7 434 45.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.4e-99 366.7 315 56.8
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 4.2e-99 365.9 316 57.0
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 6.0e-98 362.1 294 55.8
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.3e-96 356.3 320 54.1
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.0e-94 349.4 427 45.4
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 9.9e-93 344.7 286 55.2
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 3.9e-89 332.8 407 43.0
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-85 321.2 331 50.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-80 304.7 309 50.5
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.5e-80 304.3 452 40.7
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.3e-79 301.2 439 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.2e-75 286.6 225 56.4
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.6e-74 282.7 282 53.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.6e-74 282.7 183 66.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.1e-67 261.5 419 39.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 6.5e-60 235.7 561 31.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.7e-56 222.6 277 46.2
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.0e-46 189.1 384 34.4
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 3.6e-42 176.8 266 42.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 3.2e-35 153.7 125 57.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.4e-30 136.3 109 54.1
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.7e-20 104.8 130 44.6
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 3.3e-19 100.5 111 45.9
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 2.3e-17 94.4 108 45.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.9e-17 92.4 154 42.9
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 2.0e-16 91.3 153 39.2
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.9e-12 77.0 130 41.5
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-11 75.1 61 54.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.1e-10 69.3 53 52.8


User provided reference genes

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