Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 4.9e-60 234.2 112 100.0
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 4.5e-21 104.8 69 62.3
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 7.7e-21 104.0 64 67.2
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 1.3e-20 103.2 64 65.6
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.3e-20 103.2 66 63.6
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 2.2e-20 102.4 56 71.4
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 2.2e-20 102.4 56 71.4
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.9e-20 102.1 64 65.6
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 3.8e-20 101.7 70 61.4
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 5.0e-20 101.3 66 65.2
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 5.0e-20 101.3 64 65.6
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 6.5e-20 100.9 64 65.6
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 8.5e-20 100.5 63 66.7
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.5e-20 100.5 64 64.1
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.5e-20 100.5 64 64.1
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 8.5e-20 100.5 64 64.1
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 8.5e-20 100.5 64 62.5
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.1e-19 100.1 64 62.5
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.1e-19 100.1 60 65.0
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.1e-19 100.1 64 65.6
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.1e-19 100.1 64 65.6
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.1e-19 100.1 88 52.3
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-19 99.8 64 64.1
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.5e-19 99.8 63 65.1
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 1.5e-19 99.8 64 64.1
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.5e-19 99.8 101 46.5
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 1.5e-19 99.8 64 64.1
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.9e-19 99.4 64 64.1
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.9e-19 99.4 64 62.5
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 1.9e-19 99.4 83 56.6
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.9e-19 99.4 83 56.6
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 2.5e-19 99.0 64 62.5
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 3.2e-19 98.6 63 63.5
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 3.2e-19 98.6 83 56.6
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 3.2e-19 98.6 83 56.6
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.2e-19 98.6 64 60.9
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 62.5
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 62.5
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 62.5
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 64.1
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 60.9
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 4.2e-19 98.2 64 64.1
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 5.5e-19 97.8 64 62.5
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 7.2e-19 97.4 64 60.9
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 7.2e-19 97.4 63 63.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 7.2e-19 97.4 83 55.4
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 7.2e-19 97.4 64 60.9
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 9.4e-19 97.1 63 60.3
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 9.4e-19 97.1 60 63.3
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 9.4e-19 97.1 66 62.1
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.4e-19 97.1 66 62.1
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.4e-19 97.1 66 62.1
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 9.4e-19 97.1 64 60.9
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.2e-18 96.7 63 60.3
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 1.6e-18 96.3 64 64.1
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.6e-18 96.3 64 60.9
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.6e-18 96.3 64 62.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.1e-18 95.9 64 62.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.1e-18 95.9 70 57.1
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.1e-18 95.9 70 57.1
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.1e-18 95.9 83 51.8
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.7e-18 95.5 64 59.4
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 3.6e-18 95.1 63 61.9
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.6e-18 95.1 64 62.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 3.6e-18 95.1 63 60.3
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 4.7e-18 94.7 64 64.1
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 4.7e-18 94.7 62 62.9
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 4.7e-18 94.7 82 56.1
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 6.1e-18 94.4 56 62.5
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 6.1e-18 94.4 56 62.5
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 6.1e-18 94.4 56 62.5
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 6.1e-18 94.4 56 62.5
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 6.1e-18 94.4 83 49.4
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 6.1e-18 94.4 64 57.8
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 8.0e-18 94.0 86 53.5
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.0e-17 93.6 82 53.7
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.0e-17 93.6 85 52.9
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.0e-17 93.6 63 58.7
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.4e-17 93.2 63 58.7
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.4e-17 93.2 66 60.6
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.8e-17 92.8 62 59.7
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.3e-17 92.4 62 59.7
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 1.5e-16 89.7 82 50.0
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 5.7e-16 87.8 93 45.2
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 2.2e-15 85.9 89 49.4
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 3.7e-15 85.1 56 62.5
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.1e-14 83.6 56 60.7
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.2e-13 80.1 56 58.9
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 6.5e-12 74.3 57 54.4
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.1e-11 73.6 49 57.1
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-11 73.2 53 58.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.5e-11 73.2 49 61.2
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 2.5e-11 72.4 59 52.5
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 3.2e-11 72.0 42 61.9
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 3.2e-11 72.0 49 61.2
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.2e-10 70.1 67 52.2
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 1.6e-10 69.7 49 53.1
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 2.7e-10 68.9 49 59.2


User provided reference genes

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