Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 6.8e-307 1056.6 570 100.0
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-45 188.3 282 41.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.1e-42 176.0 185 51.4
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.5e-32 143.7 321 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-31 142.1 229 38.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 4.2e-30 137.1 130 50.0
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 5.1e-28 130.2 129 52.7
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-25 122.5 95 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-25 122.5 95 58.9
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 4.5e-24 117.1 124 49.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.7e-23 115.2 198 35.9
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.9e-23 114.4 144 45.1
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 8.4e-23 112.8 143 46.2
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.1e-22 112.5 197 38.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-22 112.1 119 47.9
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.4e-22 112.1 153 44.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 9.3e-22 109.4 186 35.5
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 5.1e-20 103.6 221 32.6
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.9e-19 101.7 311 28.3
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.9e-19 101.7 218 33.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.9e-19 101.7 263 31.6
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.5e-19 101.3 115 44.3
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.3e-19 100.5 314 28.3
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.3e-18 99.0 123 43.1
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-18 98.6 503 25.4
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 4.8e-18 97.1 93 45.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 6.3e-18 96.7 208 36.1
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 6.3e-18 96.7 105 39.0
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 8.2e-18 96.3 384 27.6
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.8e-17 95.1 277 31.0
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.4e-17 94.7 154 36.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.4e-17 94.7 347 26.8
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.4e-17 94.7 221 31.2
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.1e-17 94.4 242 29.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 3.1e-17 94.4 105 38.1
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.3e-17 93.6 391 29.7
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 5.3e-17 93.6 307 28.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 5.3e-17 93.6 232 31.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 6.9e-17 93.2 372 26.9
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 6.9e-17 93.2 202 30.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 9.0e-17 92.8 283 26.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.0e-16 91.7 414 26.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 2.0e-16 91.7 93 46.2
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.6e-16 91.3 167 33.5
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 4.5e-16 90.5 130 37.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 5.9e-16 90.1 126 38.1
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 7.6e-16 89.7 434 28.1
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 7.6e-16 89.7 359 25.9
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.0e-15 89.4 88 42.0
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-15 89.4 88 42.0
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.0e-15 89.4 88 42.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 2.2e-15 88.2 150 35.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.2e-15 88.2 199 32.2
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.2e-15 88.2 318 30.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.9e-15 87.8 237 30.0
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 3.8e-15 87.4 209 31.1
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.8e-15 87.4 159 32.1
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 5.0e-15 87.0 137 38.0
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 5.0e-15 87.0 95 42.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 8.5e-15 86.3 373 25.2
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 8.5e-15 86.3 262 29.4
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.1e-14 85.9 334 26.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-14 85.5 130 36.9
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.9e-14 85.1 172 35.5
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 2.5e-14 84.7 129 34.1
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 2.5e-14 84.7 230 27.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.2e-14 84.3 133 33.1
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 3.2e-14 84.3 123 36.6
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.2e-14 84.0 129 34.1
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.2e-14 84.0 318 29.9
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 4.2e-14 84.0 84 46.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 5.5e-14 83.6 153 37.3
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 5.5e-14 83.6 329 28.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 7.2e-14 83.2 304 29.6
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 7.2e-14 83.2 309 26.2
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 9.3e-14 82.8 300 27.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-13 82.4 277 25.3
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.2e-13 82.4 470 25.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-13 82.4 258 28.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.1e-13 81.6 121 33.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-13 81.6 88 40.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.1e-13 81.6 88 40.9
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.6e-13 80.9 497 26.8
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.6e-13 80.9 290 28.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.9e-13 79.7 154 32.5
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-12 79.3 137 30.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.0e-12 79.3 451 25.5
SMO192G0028 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 1.0e-12 79.3 138 34.1
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 3.0e-12 77.8 463 24.6
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.9e-12 77.4 143 29.4
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.9e-12 77.4 380 25.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.1e-12 77.0 492 22.0
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 6.7e-12 76.6 130 36.2
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 6.7e-12 76.6 130 36.2
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.7e-12 76.6 600 27.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 6.7e-12 76.6 274 28.5
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 8.8e-12 76.3 130 36.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 8.8e-12 76.3 304 25.7
Cre15.g640800 Chlamydomonas reinhardtii HOM05D003739 ORTHO05D003996 1.1e-11 75.9 111 39.6
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.5e-11 75.5 403 27.0
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.9e-11 75.1 226 27.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.3e-11 74.3 299 26.1
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.3e-11 73.9 148 35.1
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.7e-11 73.6 378 25.9
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 7.4e-11 73.2 109 39.4
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.4e-11 73.2 145 31.7
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.7e-10 72.0 378 26.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.7e-10 72.0 345 26.4
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.8e-10 71.2 89 39.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.8e-10 71.2 89 39.3
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.8e-10 71.2 212 27.8
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.7e-10 70.9 459 25.7
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.7e-10 70.9 89 39.3
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.7e-10 70.9 89 39.3
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 8.2e-10 69.7 279 28.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 8.2e-10 69.7 330 24.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 8.2e-10 69.7 330 26.4
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.4e-09 68.9 90 41.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-09 68.6 123 35.0
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.9e-09 66.6 60 45.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.9e-09 66.6 400 24.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 9.1e-09 66.2 400 24.2
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.1e-09 66.2 400 24.2
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-08 65.9 142 26.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.0e-08 65.1 131 31.3
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.0e-08 65.1 427 24.8
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.6e-08 64.7 60 51.7
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 4.5e-08 63.9 537 24.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 5.9e-08 63.5 426 23.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 5.9e-08 63.5 93 35.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 5.9e-08 63.5 375 24.3
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 7.7e-08 63.2 366 27.0
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-07 62.4 397 25.2
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.3e-07 62.4 402 24.6
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.7e-07 62.0 295 25.1
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.5e-07 60.1 561 25.5
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-06 59.3 122 32.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.9e-06 58.5 75 38.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-06 58.5 506 23.5
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.5e-06 58.2 45 60.0
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.5e-06 58.2 382 26.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.2e-06 56.6 82 39.0


User provided reference genes

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