Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 0.0e+00 1928.7 983 100.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-204 716.8 960 44.8
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-204 716.8 960 44.8
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.0e-112 411.4 852 33.2
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.2e-97 360.1 888 31.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.2e-97 360.1 973 29.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 5.2e-97 360.1 983 29.5
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 5.8e-96 356.7 979 29.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.7e-95 354.0 949 30.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-95 353.2 979 29.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.4e-94 351.3 951 29.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-93 348.6 982 29.0
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-93 348.6 950 29.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.1e-93 348.2 971 29.7
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.9e-92 344.0 942 30.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.1e-92 343.6 957 30.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.1e-91 342.4 957 30.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.9e-91 341.7 954 29.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.9e-91 341.7 887 31.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 7.3e-91 339.7 985 28.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.2e-90 336.7 980 28.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 8.1e-90 336.3 950 29.2
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.1e-89 335.9 814 31.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.1e-89 335.9 896 30.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.4e-89 335.5 825 31.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 3.1e-89 334.3 958 29.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 6.8e-89 333.2 866 29.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.8e-88 330.1 937 29.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-87 328.9 790 30.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-87 328.9 790 30.8
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.2e-87 328.2 948 29.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-87 328.2 890 30.4
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.9e-87 327.8 951 29.2
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.8e-87 327.4 957 29.4
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 4.9e-87 327.0 960 28.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.4e-86 324.7 944 28.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 7.1e-86 323.2 888 30.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.6e-85 322.0 788 31.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.5e-85 320.9 986 28.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.0e-85 320.1 947 28.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.0e-84 317.8 952 28.4
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.9e-84 317.4 718 32.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.9e-84 317.4 944 26.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.6e-84 316.6 979 28.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.3e-83 314.3 360 48.1
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.6e-83 313.5 722 31.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.6e-82 312.0 976 28.3
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 6.2e-82 310.1 954 28.5
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 6.2e-82 310.1 954 28.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.2e-82 310.1 943 26.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.4e-81 308.9 937 28.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.9e-81 306.6 954 28.1
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.5e-80 305.4 958 28.7
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.5e-80 305.4 954 28.0
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-80 305.1 995 26.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 4.4e-80 303.9 973 28.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.3e-79 302.4 958 27.5
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.7e-79 302.0 969 27.1
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.2e-79 301.6 946 26.7
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.2e-79 301.6 983 28.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 4.9e-79 300.4 994 27.6
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.9e-79 300.4 815 29.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-78 298.1 996 28.1
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.4e-78 298.1 815 29.3
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 4.2e-78 297.4 957 27.4
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.4e-78 297.0 954 27.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.7e-77 294.7 788 29.3
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.5e-77 294.3 946 27.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 4.6e-77 293.9 967 27.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.1e-76 290.4 958 27.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 6.6e-76 290.0 960 28.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.6e-75 287.0 963 28.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.2e-74 283.5 953 28.2
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-73 282.7 934 27.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.4e-73 282.3 896 27.6
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 6.9e-73 280.0 958 27.2
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 9.0e-73 279.6 960 27.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 9.0e-73 279.6 965 27.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 9.0e-73 279.6 782 29.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.6e-72 278.1 959 27.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 7.6e-72 276.6 960 27.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 7.6e-72 276.6 837 29.0
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 9.9e-72 276.2 959 27.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-71 275.8 960 27.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.2e-70 271.2 994 26.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.6e-69 268.9 944 26.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 7.4e-67 260.0 813 26.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 7.4e-67 260.0 971 26.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.3e-66 259.2 948 26.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.8e-66 258.1 722 30.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.4e-65 255.0 795 28.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.8e-64 250.4 919 26.7
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 7.6e-64 250.0 671 28.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-63 248.4 973 26.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.8e-63 247.7 950 26.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.2e-62 244.6 958 26.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 7.1e-62 243.4 1035 25.5
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.0e-60 239.6 720 28.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.3e-60 238.4 980 25.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.9e-60 237.7 820 27.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.7e-60 236.5 685 29.3
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-59 235.7 966 26.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 9.6e-59 233.0 774 28.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-57 229.2 711 26.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.0e-56 225.3 784 26.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.0e-55 223.0 958 25.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.1e-51 209.5 810 26.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.3e-49 200.7 622 27.3
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-48 199.5 639 27.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.9e-46 192.2 866 24.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 7.4e-43 180.3 489 29.2
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.3e-42 179.5 936 23.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.2e-42 178.7 353 32.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.8e-42 178.3 224 44.2
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 3.1e-41 174.9 957 22.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 7.7e-40 170.2 545 27.2
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-39 169.5 554 27.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.3e-39 169.5 265 36.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.5e-39 167.2 978 23.3
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-37 162.5 226 39.4
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 7.9e-37 160.2 194 43.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.3e-36 158.7 836 22.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.0e-36 158.3 229 39.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.5e-35 156.0 723 23.8
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.0e-35 155.6 186 45.2
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.8e-33 149.1 178 44.4
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.5e-32 144.8 186 40.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.0e-31 141.0 350 27.7
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.2e-29 136.3 187 40.6
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 6.1e-29 134.0 448 26.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 6.7e-28 130.6 187 39.6
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 5.7e-27 127.5 483 25.9
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 7.5e-27 127.1 492 26.4
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.2e-26 123.6 301 32.2
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.5e-24 118.2 137 46.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.6e-21 108.2 194 33.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 8.0e-21 107.1 213 31.9
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.0e-19 102.4 82 59.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.5e-19 100.5 201 33.8
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.7e-18 99.4 88 54.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.2e-18 99.0 180 35.6
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.7e-18 98.2 331 26.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-17 96.3 133 39.8
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-17 96.3 184 32.6
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.1e-17 95.1 192 31.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.1e-17 95.1 197 32.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.5e-16 91.3 128 39.1
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 7.7e-16 90.5 98 53.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.9e-15 88.6 311 25.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.4e-12 79.7 97 41.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-12 78.6 82 47.6


User provided reference genes

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