Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 6.8e-49 196.8 87 100.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 2.6e-32 141.7 80 77.5
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 5.8e-24 114.0 80 70.0
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.9e-23 110.9 81 66.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 6.4e-23 110.5 82 65.9
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 8.3e-23 110.2 80 65.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-22 109.4 81 65.4
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.4e-22 109.4 81 63.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.4e-22 109.4 67 68.7
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.9e-22 109.0 79 68.4
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.9e-22 109.0 80 63.8
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.2e-22 108.2 80 65.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 3.2e-22 108.2 80 65.0
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 4.1e-22 107.8 80 65.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 4.1e-22 107.8 80 65.0
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 4.1e-22 107.8 82 65.9
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 4.1e-22 107.8 80 65.0
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 4.1e-22 107.8 81 64.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 5.4e-22 107.5 80 62.5
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 7.1e-22 107.1 82 65.9
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 7.1e-22 107.1 83 65.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 7.1e-22 107.1 85 63.5
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.2e-21 106.3 82 63.4
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.6e-21 105.9 80 65.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.6e-21 105.9 80 65.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 65.4
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 65.4
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 61.7
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 61.7
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 61.7
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 63.0
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.1e-21 105.5 81 63.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.1e-21 105.5 85 63.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.7e-21 105.1 81 65.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.7e-21 105.1 84 61.9
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.7e-21 105.1 84 61.9
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.7e-21 105.1 82 61.0
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 2.7e-21 105.1 80 63.8
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 3.5e-21 104.8 79 62.0
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.5e-21 104.8 80 63.8
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.5e-21 104.8 80 61.2
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-21 104.8 81 60.5
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.5e-21 104.8 84 63.1
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.6e-21 104.4 83 60.2
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.6e-21 104.4 83 60.2
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 4.6e-21 104.4 82 63.4
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 4.6e-21 104.4 82 64.6
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.6e-21 104.4 83 60.2
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 4.6e-21 104.4 84 63.1
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 6.0e-21 104.0 83 61.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 7.8e-21 103.6 79 60.8
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.8e-21 103.6 80 63.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 7.8e-21 103.6 79 65.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 7.8e-21 103.6 81 65.4
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.0e-20 103.2 80 62.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.0e-20 103.2 80 62.5
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.0e-20 103.2 81 64.2
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-20 103.2 79 60.8
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.0e-20 103.2 77 63.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-20 102.8 80 62.5
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.3e-20 102.8 80 62.5
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.3e-20 102.8 82 64.6
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.3e-20 102.8 86 59.3
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.3e-20 102.8 84 63.1
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.3e-20 102.8 79 62.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.3e-20 102.8 80 60.0
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.7e-20 102.4 83 61.4
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.3e-20 102.1 81 64.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.0e-20 101.7 80 62.5
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.0e-20 101.7 80 63.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.0e-20 101.7 76 61.8
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.9e-20 101.3 80 63.8
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 5.1e-20 100.9 80 62.5
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 5.1e-20 100.9 84 59.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 6.6e-20 100.5 80 61.2
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 6.6e-20 100.5 81 60.5
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 6.6e-20 100.5 81 59.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 6.6e-20 100.5 83 60.2
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 8.6e-20 100.1 81 63.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 8.6e-20 100.1 80 63.8
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 8.6e-20 100.1 80 60.0
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 8.6e-20 100.1 80 58.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 8.6e-20 100.1 79 63.3
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.1e-19 99.8 81 64.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.1e-19 99.8 81 63.0
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.1e-19 99.8 61 68.9
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.5e-19 99.4 75 61.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.5e-19 99.4 79 62.0
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.9e-19 99.0 79 60.8
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 57.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 57.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 58.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 58.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 58.8
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.5e-19 98.6 80 60.0
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 3.3e-19 98.2 78 61.5
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.3e-19 98.2 79 57.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 4.3e-19 97.8 81 61.7
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 4.3e-19 97.8 61 67.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.3e-19 97.8 80 61.2
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 5.6e-19 97.4 82 61.0
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 7.3e-19 97.1 79 60.8
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 7.3e-19 97.1 81 60.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.6e-18 95.9 82 61.0
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.6e-18 95.9 82 61.0
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.8e-18 95.1 80 60.0
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 4.7e-18 94.4 80 58.8
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 8.1e-18 93.6 80 57.5
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.1e-17 93.2 82 58.5
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.4e-17 92.8 57 70.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.2e-16 89.7 75 57.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.5e-16 89.4 56 67.9
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.5e-16 89.4 70 54.3
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 9.9e-16 86.7 80 55.0
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.4e-14 82.0 97 50.5
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 6.0e-13 77.4 67 56.7
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.3e-12 75.5 150 33.3
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.6e-12 73.9 64 62.5
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.1e-11 73.2 58 58.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.9e-11 72.4 59 55.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 7.3e-11 70.5 65 56.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.3e-10 69.7 61 55.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 2.8e-10 68.6 61 60.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.6e-10 68.2 63 52.4
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.6e-10 68.2 66 57.6
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.1e-10 67.0 63 55.6
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 8.1e-10 67.0 60 53.3
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 8.1e-10 67.0 62 53.2
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.1e-09 66.6 58 53.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.8e-09 65.9 60 56.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.8e-09 65.9 61 52.5
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-09 65.9 60 53.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-09 65.9 60 53.3
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.4e-09 65.5 60 56.7
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.4e-09 65.5 63 55.6
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.1e-09 65.1 60 55.0
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 6.9e-09 63.9 60 58.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 6.9e-09 63.9 68 54.4
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.5e-08 62.8 63 54.0
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.5e-08 62.8 60 55.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 2.0e-08 62.4 62 54.8
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 4.4e-08 61.2 62 53.2
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.7e-07 59.3 62 53.2
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.2e-07 58.9 64 50.0
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-07 58.2 38 63.2
Cre17.g725400 Chlamydomonas reinhardtii HOM05D005277 ORTHO05D006319 3.2e-06 55.1 100 36.0


User provided reference genes

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