Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 3478.0 1886 100.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1900.6 1637 61.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1889.8 1783 58.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1801.9 1648 58.7
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1781.9 1931 51.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1743.8 1929 51.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1698.7 1473 57.2
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1682.9 1649 54.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1679.8 1622 54.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1677.9 1711 53.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1663.3 1632 54.1
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1662.9 1672 53.8
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1658.3 1477 56.1
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1653.6 1640 54.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1648.3 1716 52.4
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1647.1 1473 56.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1646.7 1635 54.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1646.3 1647 53.6
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1645.9 1474 56.1
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1643.6 1675 52.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1642.1 1653 52.9
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1638.2 1571 53.9
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1632.1 1622 53.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1631.7 1690 51.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1627.8 1744 51.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1627.8 1626 52.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1627.1 1652 52.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1624.4 1670 52.8
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1624.0 1635 53.1
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1622.8 1659 52.6
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1621.7 1625 52.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1619.8 1623 52.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1611.3 1615 53.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1610.5 1667 52.1
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1609.7 1614 53.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1609.0 1667 52.2
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1605.1 1645 52.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1602.8 1748 50.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1602.4 1620 52.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1601.3 1673 51.8
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1600.5 1475 53.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1599.7 1692 51.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1598.9 1655 52.0
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1598.9 1667 51.8
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1598.2 1564 53.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1596.3 1641 52.2
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1594.3 1647 52.5
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1593.2 1614 52.2
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1592.4 1698 51.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1592.4 1669 51.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1592.0 1476 54.1
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1591.6 1674 51.7
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1588.2 1625 52.4
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1586.6 1668 52.0
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1582.8 1673 51.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1578.1 1649 51.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1575.5 1602 51.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1575.5 1654 51.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1575.1 1670 51.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1574.3 1679 50.7
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1571.2 1685 50.1
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1563.9 1677 51.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1563.1 1632 52.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1562.7 1679 50.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1560.8 1672 51.2
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1560.4 1663 51.0
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1556.2 1672 51.0
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1555.8 1673 50.9
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1554.3 1642 50.8
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1551.6 1415 55.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1542.7 1703 49.3
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1539.2 1677 50.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1527.7 1666 49.8
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1518.4 1537 52.2
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1514.2 1640 49.9
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1514.2 1659 50.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1510.7 1623 50.0
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1509.6 1622 51.2
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1509.2 1641 49.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1508.8 1654 49.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1503.4 1471 54.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1493.8 1856 46.4
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1493.0 1424 52.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1491.9 1771 48.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1480.3 1297 55.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1473.0 1650 48.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1468.0 1293 54.5
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1462.6 1328 54.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1456.0 1672 46.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1446.0 1593 49.8
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1379.4 1159 57.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1371.7 1458 50.1
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1352.0 2088 40.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1327.0 1641 44.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1286.9 1641 45.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1268.8 1722 44.3
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1216.8 1086 54.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1202.6 1046 56.0
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1130.2 1202 49.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1112.8 938 57.6
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1104.7 1586 43.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 6.6e-290 1001.9 1336 44.7
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.9e-258 896.3 1062 49.2
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-250 870.9 1043 48.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.9e-250 869.8 912 48.6
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.5e-249 867.8 1123 45.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 4.2e-220 770.0 741 52.4
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.5e-213 745.7 617 58.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.0e-207 726.1 674 51.6
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.5e-205 719.2 861 49.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.5e-201 708.4 601 56.6
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.2e-196 690.3 850 40.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.6e-190 671.8 553 60.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-162 579.3 816 45.1
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-138 499.2 424 56.1
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.6e-131 475.7 377 62.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 4.0e-130 471.1 1468 27.1
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 3.9e-125 454.5 331 66.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 8.5e-112 410.2 425 48.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.9e-104 385.2 887 30.2
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.1e-82 311.6 338 52.1
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.3e-82 311.2 536 44.8
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.7e-72 279.6 240 55.8
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-69 269.2 242 50.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.7e-62 245.0 663 28.1
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.4e-61 243.4 506 41.5
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.5e-60 237.7 214 49.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.0e-57 229.6 581 38.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.3e-51 210.3 203 51.7
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-51 209.9 190 53.7
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.9e-42 179.9 176 46.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.1e-41 176.4 175 48.0
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.7e-38 165.2 153 50.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.8e-37 163.3 115 69.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.4e-36 159.1 97 80.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.6e-30 139.0 126 55.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.5e-28 133.7 320 36.9
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 8.4e-27 127.9 116 48.3
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.9e-26 126.7 170 41.2
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 5.4e-26 125.2 206 38.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.8e-22 112.1 69 78.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 6.9e-21 108.2 191 36.6
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 3.4e-20 105.9 113 38.9
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 7.1e-18 98.2 78 66.7
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.6e-17 95.5 108 47.2
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-16 93.2 64 67.2
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 2.3e-16 93.2 93 50.5
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 4.3e-15 89.0 56 75.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 5.6e-15 88.6 215 31.6
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.4e-12 79.3 106 36.8
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 3.4e-12 79.3 54 66.7
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.9e-11 76.3 140 33.6
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 4.2e-10 72.4 47 70.2
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.7e-09 69.7 61 50.8
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.0e-08 67.8 49 61.2
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.3e-08 66.6 138 34.1
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.5e-07 63.2 58 46.6
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.3e-07 62.8 45 57.8
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-07 61.6 94 31.9
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.3e-06 60.8 61 47.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.6e-06 60.5 39 69.2
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.7e-06 59.3 40 62.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 8.2e-06 58.2 52 51.9


User provided reference genes

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