Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 0.0e+00 1475.3 814 100.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.1e-119 435.3 455 55.6
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.1e-116 422.5 355 63.4
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.6e-115 421.4 421 58.2
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-111 408.3 287 73.2
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.5e-110 403.3 371 60.4
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.7e-109 401.4 353 62.0
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 2.2e-109 401.0 354 61.9
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.9e-109 400.6 368 60.1
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.8e-109 400.2 338 63.6
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.1e-108 398.7 354 61.6
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.1e-108 398.7 362 59.9
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-108 397.9 380 58.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 2.4e-108 397.5 358 60.9
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.4e-108 397.5 343 61.8
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 2.4e-108 397.5 363 61.2
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 5.5e-108 396.4 359 60.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 7.1e-108 396.0 398 56.0
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 9.3e-108 395.6 338 62.7
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 9.3e-108 395.6 343 61.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 9.3e-108 395.6 352 61.4
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.6e-107 394.8 351 60.1
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 2.1e-107 394.4 339 61.4
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.5e-107 393.7 362 59.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.5e-107 393.7 286 72.4
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 7.9e-107 392.5 341 62.2
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 7.9e-107 392.5 287 71.1
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.0e-106 392.1 339 61.1
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 1.8e-106 391.3 357 59.9
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.8e-106 391.3 362 67.1
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.8e-106 391.3 367 59.1
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.3e-106 391.0 352 60.2
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.3e-106 391.0 357 59.7
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.0e-106 390.6 352 60.2
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 3.9e-106 390.2 348 61.2
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 2.5e-105 387.5 352 59.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.3e-105 387.1 339 60.8
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 4.3e-105 386.7 344 60.8
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 4.3e-105 386.7 339 62.2
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.6e-105 386.3 354 59.9
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 7.4e-105 386.0 361 58.7
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 2.1e-104 384.4 358 60.1
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 3.7e-104 383.6 343 61.8
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.8e-104 383.3 347 60.2
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.2e-104 382.9 363 57.9
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 8.2e-104 382.5 351 60.1
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 8.2e-104 382.5 361 59.3
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 4.0e-103 380.2 340 59.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.9e-103 379.4 349 60.5
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 6.9e-103 379.4 367 58.0
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.5e-102 378.3 305 65.2
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.4e-102 377.1 369 58.0
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 3.4e-102 377.1 345 60.6
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 4.5e-102 376.7 358 59.2
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 7.6e-102 375.9 366 57.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.3e-101 375.2 444 51.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 2.2e-101 374.4 354 58.2
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.2e-101 374.4 366 57.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.8e-101 373.6 345 59.7
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 8.4e-101 372.5 362 58.0
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 8.4e-101 372.5 361 58.2
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.4e-100 371.7 338 58.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.5e-100 370.9 361 57.6
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 4.2e-100 370.2 305 63.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 5.5e-100 369.8 344 59.9
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 5.5e-100 369.8 359 57.9
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 7.1e-100 369.4 358 58.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 7.1e-100 369.4 350 57.1
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 7.1e-100 369.4 363 57.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.2e-99 368.6 342 59.4
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.7e-99 367.5 362 57.5
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 4.6e-99 366.7 344 60.5
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 7.9e-99 365.9 287 67.6
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.3e-98 365.2 356 57.3
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.1e-98 363.2 356 57.3
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.5e-97 361.7 377 54.1
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.9e-97 361.3 369 55.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.3e-97 360.5 364 56.0
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 4.3e-97 360.1 334 59.6
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.3e-97 360.1 312 63.8
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.7e-97 359.0 344 59.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 9.7e-97 359.0 374 55.6
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.3e-96 358.6 334 59.3
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.3e-96 358.6 373 53.6
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.6e-96 358.2 356 56.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 2.2e-96 357.8 334 59.3
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.2e-96 357.8 334 59.3
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.2e-96 357.8 334 59.3
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.2e-96 357.8 347 56.5
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 3.7e-96 357.1 287 65.9
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 3.7e-96 357.1 347 56.5
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.8e-96 356.7 306 62.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 8.2e-96 355.9 348 57.2
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 8.2e-96 355.9 348 57.2
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.8e-95 354.8 344 58.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 2.4e-95 354.4 360 55.8
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 4.1e-95 353.6 344 57.8
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.1e-95 353.6 341 56.9
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 5.3e-95 353.2 357 57.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.0e-94 351.3 358 55.9
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.6e-94 350.9 334 58.4
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.6e-94 350.9 345 57.1
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-94 350.1 344 58.1
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-94 350.1 344 57.6
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 4.5e-94 350.1 344 57.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 5.9e-94 349.7 361 54.6
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.6e-94 349.4 287 63.1
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.1e-92 345.5 365 54.8
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.4e-92 345.1 372 54.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.9e-92 344.7 351 55.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.5e-92 343.2 356 55.6
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 9.3e-92 342.4 360 53.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.6e-91 341.7 338 58.3
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.7e-91 340.9 338 54.7
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 3.6e-91 340.5 347 54.2
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.9e-91 339.3 304 60.5
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 1.8e-90 338.2 362 55.2
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 5.1e-90 336.7 340 55.6
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 8.8e-90 335.9 351 54.1
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.5e-89 334.3 367 55.0
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.8e-88 330.1 267 65.9
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.4e-87 328.6 296 62.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.8e-87 328.2 339 54.0
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 5.0e-85 320.1 353 52.1
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.4e-82 312.0 306 55.6
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.8e-80 304.3 340 51.5
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.8e-80 303.5 268 63.4
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 8.2e-80 302.8 288 56.9
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.2e-77 294.7 243 64.2
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 8.5e-77 292.7 251 64.5
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.8e-72 277.7 314 52.2
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.1e-71 275.8 272 56.6
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.4e-71 274.6 303 55.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.5e-70 270.8 276 58.7
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 6.7e-66 256.5 348 46.3
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.0e-61 240.4 183 72.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 5.0e-61 240.4 262 53.1
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 6.1e-59 233.4 216 60.6
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-40 171.4 124 74.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 4.1e-39 167.5 167 56.3
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.9e-29 134.4 118 58.5
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.2e-24 118.6 101 58.4
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.9e-21 107.8 76 61.8
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 8.6e-21 106.7 67 67.2
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 9.5e-20 103.2 83 71.1
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 4.0e-18 97.8 109 47.7
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.3e-16 92.8 62 75.8
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 4.9e-16 90.9 120 45.8
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.2e-15 88.2 122 44.3
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.1e-15 87.0 97 54.6
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.2e-14 86.3 133 42.9
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 6.0e-14 84.0 125 47.2
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.0e-13 81.6 66 62.1
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.4e-10 72.0 48 70.8
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.4e-10 72.0 251 27.9
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.4e-07 62.8 170 27.6
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 4.2e-07 61.2 58 51.7
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.6e-06 59.3 58 55.2
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 3.5e-06 58.2 42 64.3


User provided reference genes

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