Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0018 Marchantia polymorpha HOM05D003103 ORTHO05D003999 2.5e-53 211.8 105 100.0
Mapoly0010s0215 Marchantia polymorpha HOM05D003103 ORTHO05D003999 3.0e-19 98.6 63 76.2
Mapoly0013s0004 Marchantia polymorpha HOM05D003103 ORTHO05D003999 1.3e-17 93.2 62 71.0
Pp3c24_5980 Physcomitrium patens HOM05D003103 ORTHO05D003999 4.8e-17 91.3 74 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1320 Anthoceros agrestis HOM05D003103 ORTHO05D003999 8.3e-17 90.5 69 62.3
Medtr4g094805 Medicago truncatula HOM05D003103 ORTHO05D003999 9.1e-16 87.0 65 64.6
SMO358G0676 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 1.2e-15 86.7 69 63.8
Aqoxy6G01280 Aquilegia oxysepala HOM05D003103 ORTHO05D003999 2.0e-15 85.9 63 65.1
Psat4g086400 Pisum sativum HOM05D003103 ORTHO05D003999 2.0e-15 85.9 65 63.1
Ca_22156_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 3.5e-15 85.1 65 61.5
Glyma.05G094000 Glycine max HOM05D003103 ORTHO05D003999 3.5e-15 85.1 65 61.5
SEGI_29401 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 3.5e-15 85.1 63 61.9
TPR.G19077 Trifolium pratense HOM05D003103 ORTHO05D003999 3.5e-15 85.1 65 61.5
Lj7C70G24 Lonicera japonica HOM05D003103 ORTHO05D003999 4.5e-15 84.7 65 63.1
Potri.005G139800 Populus trichocarpa HOM05D003103 ORTHO05D003999 5.9e-15 84.3 69 62.3
Solyc03g044430.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 5.9e-15 84.3 72 56.9
Sopen03g008560 Solanum pennellii HOM05D003103 ORTHO05D003999 5.9e-15 84.3 72 56.9
arahy.Tifrunner.gnm1.ann1.556YNA Arachis hypogaea HOM05D003103 ORTHO05D003999 7.7e-15 84.0 65 61.5
arahy.Tifrunner.gnm1.ann1.TC99UD Arachis hypogaea HOM05D003103 ORTHO05D003999 7.7e-15 84.0 65 61.5
Phvul.003G243000 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 7.7e-15 84.0 65 60.0
Zm00001eb063870 Zea mays HOM05D003103 ORTHO05D003999 7.7e-15 84.0 63 61.9
Lj4g0002336 Lotus japonicus HOM05D003103 ORTHO05D003999 1.0e-14 83.6 65 60.0
Potri.007G045400 Populus trichocarpa HOM05D003103 ORTHO05D003999 1.0e-14 83.6 69 60.9
Lalb_Chr09g0323251 Lupinus albus HOM05D003103 ORTHO05D003999 1.3e-14 83.2 65 60.0
Lalb_Chr16g0388671 Lupinus albus HOM05D003103 ORTHO05D003999 1.3e-14 83.2 65 61.5
Nitab4.5_0001064g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 1.7e-14 82.8 65 61.5
PSO541G2306 Papaver somniferum HOM05D003103 ORTHO05D003999 1.7e-14 82.8 65 61.5
PSO675G0324 Papaver somniferum HOM05D003103 ORTHO05D003999 1.7e-14 82.8 65 61.5
VMungo0251G1095 Vigna mungo HOM05D003103 ORTHO05D003999 1.7e-14 82.8 65 60.0
Lalb_Chr05g0226491 Lupinus albus HOM05D003103 ORTHO05D003999 2.2e-14 82.4 65 60.0
TPR.G26868 Trifolium pratense HOM05D003103 ORTHO05D003999 2.2e-14 82.4 65 60.0
Ah.03g145520 Amaranthus hybridus HOM05D003103 ORTHO05D003999 2.9e-14 82.0 69 58.0
TAR381G0597 Trochodendron aralioides HOM05D003103 ORTHO05D003999 2.9e-14 82.0 65 60.0
MELO3C020858.2 Cucumis melo HOM05D003103 ORTHO05D003999 3.8e-14 81.6 65 61.5
CsaV3_2G016480 Cucumis sativus L. HOM05D003103 ORTHO05D003999 3.8e-14 81.6 65 61.5
Dinv30000 Davidia involucrata HOM05D003103 ORTHO05D003999 3.8e-14 81.6 65 61.5
Nn1g04803 Nelumbo nucifera HOM05D003103 ORTHO05D003999 3.8e-14 81.6 65 61.5
EL10Ac6g15729 Beta vulgaris HOM05D003103 ORTHO05D003999 5.0e-14 81.3 69 56.5
DCAR_010882 Daucus carota HOM05D003103 ORTHO05D003999 5.0e-14 81.3 65 61.5
Nn5g30339 Nelumbo nucifera HOM05D003103 ORTHO05D003999 5.0e-14 81.3 65 61.5
Peaxi162Scf00685g00413 Petunia axillaris HOM05D003103 ORTHO05D003999 5.0e-14 81.3 65 60.0
Psat2g166720 Pisum sativum HOM05D003103 ORTHO05D003999 5.0e-14 81.3 65 60.0
CANSAT01G0334 Cannabis sativa HOM05D003103 ORTHO05D003999 6.5e-14 80.9 65 60.0
Eucgr.I00907 Eucalyptus grandis HOM05D003103 ORTHO05D003999 6.5e-14 80.9 65 58.5
QL06p040980 Quercus lobata HOM05D003103 ORTHO05D003999 6.5e-14 80.9 65 61.5
CAN.G370.47 Capsicum annuum HOM05D003103 ORTHO05D003999 8.5e-14 80.5 65 60.0
CDE08G1087 Ceratophyllum demersum HOM05D003103 ORTHO05D003999 8.5e-14 80.5 63 63.5
Migut.H00421 Erythranthe guttata HOM05D003103 ORTHO05D003999 8.5e-14 80.5 65 60.0
SGA_v2.0_scaffold15G07323 Striga asiatica HOM05D003103 ORTHO05D003999 8.5e-14 80.5 65 60.0
Cfa004034 Carpinus fangiana HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
CiPaw.01G016600 Carya illinoinensis HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
Haze_15380 Corylus avellana HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
Lj4C151G10 Lonicera japonica HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 58.5
Nitab4.5_0002646g0010 Nicotiana tabacum HOM05D003103 ORTHO05D003999 1.1e-13 80.1 62 61.3
SalBow5G1645 Salvia bowleyana HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
Hund16344 Selenicereus undatus HOM05D003103 ORTHO05D003999 1.1e-13 80.1 69 56.5
Sc03g0001680 Simmondsia chinensis HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
PGSC0003DMG400004012 Solanum tuberosum HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
GSVIVG01022112001 Vitis vinifera HOM05D003103 ORTHO05D003999 1.1e-13 80.1 65 60.0
AL7G13700 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
AT4G36940 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
BcaNung05429 Brassica carinata HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
CARHR245570 Cardamine hirsuta HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
Cpa.g.sc55.133 Carica papaya HOM05D003103 ORTHO05D003999 1.5e-13 79.7 69 58.0
AUR62001914 Chenopodium quinoa HOM05D003103 ORTHO05D003999 1.5e-13 79.7 69 56.5
AUR62003895 Chenopodium quinoa HOM05D003103 ORTHO05D003999 1.5e-13 79.7 69 56.5
Thhalv10024704m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
Medtr5g017050 Medicago truncatula HOM05D003103 ORTHO05D003999 1.5e-13 79.7 65 56.9
Os03g0837300 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 1.5e-13 79.7 67 56.7
Sp7g34830 Schrenkiella parvula HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 60.3
Hund13545 Selenicereus undatus HOM05D003103 ORTHO05D003999 1.5e-13 79.7 71 54.9
THA.LOC104819846 Tarenaya hassleriana HOM05D003103 ORTHO05D003999 1.5e-13 79.7 63 58.7
Actinidia03793 Actinidia chinensis HOM05D003103 ORTHO05D003999 1.9e-13 79.3 65 61.5
arahy.Tifrunner.gnm1.ann1.WH2MYH Arachis hypogaea HOM05D003103 ORTHO05D003999 1.9e-13 79.3 65 56.9
MSTRG.3432 Avicennia marina HOM05D003103 ORTHO05D003999 1.9e-13 79.3 63 58.7
CAN.G11.2 Capsicum annuum HOM05D003103 ORTHO05D003999 1.9e-13 79.3 65 60.0
Zm00001eb422480 Zea mays HOM05D003103 ORTHO05D003999 1.9e-13 79.3 63 60.3
Atru.chr3.305 Acer truncatum HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Actinidia16477 Actinidia chinensis HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 61.5
BcaC07g40987 Brassica carinata HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
A09p56930 Brassica napus HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
C08p39890 Brassica napus HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
BolC8t51562H Brassica oleracea HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
BraA09t41085Z Brassica rapa HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
CSS0023497 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 61.5
Cc07_g06120 Coffea canephora HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Thhalv10000109m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
Nitab4.5_0002029g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Nitab4.5_0003519g0020 Nicotiana tabacum HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Sp4g02410 Schrenkiella parvula HOM05D003103 ORTHO05D003999 2.5e-13 79.0 63 60.3
Solyc02g093290.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Sopen02g037850 Solanum pennellii HOM05D003103 ORTHO05D003999 2.5e-13 79.0 65 58.5
Actinidia12044 Actinidia chinensis HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 58.5
Carub.0004s0262 Capsella rubella HOM05D003103 ORTHO05D003999 3.2e-13 78.6 63 60.3
CARHR293030 Cardamine hirsuta HOM05D003103 ORTHO05D003999 3.2e-13 78.6 63 60.3
Ciclev10025298m.g Citrus clementina HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 58.5
COL.COLO4_11442 Corchorus olitorius HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 58.5
ECA246G4532 Erigeron canadensis HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 60.0
HanXRQChr12g0381311 Helianthus annuus HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 58.5
Os04g0429800 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 58.5
vmacro17957 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 3.2e-13 78.6 65 56.9
VMungo1215G3025 Vigna mungo HOM05D003103 ORTHO05D003999 3.2e-13 78.6 63 60.3
Manes.12G104000 Manihot esculenta HOM05D003103 ORTHO05D003999 4.2e-13 78.2 65 58.5
Phvul.002G017800 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 4.2e-13 78.2 63 58.7
Sed0020253 Sechium edule HOM05D003103 ORTHO05D003999 4.2e-13 78.2 65 60.0
TWI73G1128 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 4.2e-13 78.2 63 58.7
AL4G13330 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 5.5e-13 77.8 63 58.7
AT2G23420 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 5.5e-13 77.8 63 58.7
Gohir.A11G193300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 58.5
Gohir.D11G200400 Gossypium hirsutum HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 58.5
Gorai.007G214700 Gossypium raimondii HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 58.5
Lsat_1_v5_gn_3_89301 Lactuca sativa HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 58.5
MD15G1285500 Malus domestica HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 60.0
SMO143G0022 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 5.5e-13 77.8 61 62.3
Thecc.01G058700 Theobroma cacao HOM05D003103 ORTHO05D003999 5.5e-13 77.8 65 58.5
CSS0011350 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 7.2e-13 77.4 65 58.5
Prupe.7G131500 Prunus persica HOM05D003103 ORTHO05D003999 7.2e-13 77.4 65 58.5
PGR102G2176 Punica granatum HOM05D003103 ORTHO05D003999 7.2e-13 77.4 63 58.7
SGA_v2.0_scaffold62G21520 Striga asiatica HOM05D003103 ORTHO05D003999 7.2e-13 77.4 65 58.5
TAR625G1079 Trochodendron aralioides HOM05D003103 ORTHO05D003999 7.2e-13 77.4 65 56.9
Aa31LG6G14040 Aethionema arabicum HOM05D003103 ORTHO05D003999 9.5e-13 77.0 65 58.5
FvH4_1g16212 Fragaria vesca HOM05D003103 ORTHO05D003999 1.2e-12 76.6 63 58.7
FAN28G1880 Fragaria x ananassa HOM05D003103 ORTHO05D003999 1.2e-12 76.6 63 58.7
RcHm_v2.0_Chr2g0105921 Rosa chinensis HOM05D003103 ORTHO05D003999 1.2e-12 76.6 65 58.5
RcHm_v2.0_Chr7g0236011 Rosa chinensis HOM05D003103 ORTHO05D003999 1.2e-12 76.6 65 58.5
Sed0023462 Sechium edule HOM05D003103 ORTHO05D003999 1.2e-12 76.6 65 60.0
arahy.Tifrunner.gnm1.ann1.Q9CK1R Arachis hypogaea HOM05D003103 ORTHO05D003999 1.6e-12 76.3 65 55.4
Carub.0007s0312 Capsella rubella HOM05D003103 ORTHO05D003999 1.6e-12 76.3 63 57.1
MD02G1174500 Malus domestica HOM05D003103 ORTHO05D003999 1.6e-12 76.3 63 58.7
Glyma.01G187500 Glycine max HOM05D003103 ORTHO05D003999 2.1e-12 75.9 65 55.4
ClCG02G012340 Citrullus lanatus HOM05D003103 ORTHO05D003999 2.7e-12 75.5 61 60.7
ECA238G1051 Erigeron canadensis HOM05D003103 ORTHO05D003999 2.7e-12 75.5 65 55.4
HanXRQChr14g0449051 Helianthus annuus HOM05D003103 ORTHO05D003999 2.7e-12 75.5 65 55.4
Lsat_1_v5_gn_2_84981 Lactuca sativa HOM05D003103 ORTHO05D003999 2.7e-12 75.5 65 55.4
MSTRG.15382 Avicennia marina HOM05D003103 ORTHO05D003999 3.6e-12 75.1 65 56.9
Gohir.A12G072300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 4.7e-12 74.7 65 55.4
Gohir.D12G070200 Gossypium hirsutum HOM05D003103 ORTHO05D003999 4.7e-12 74.7 65 55.4
Gorai.008G077200 Gossypium raimondii HOM05D003103 ORTHO05D003999 4.7e-12 74.7 65 55.4
TWI09G1566 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 4.7e-12 74.7 63 55.6
Ah.03g145530 Amaranthus hybridus HOM05D003103 ORTHO05D003999 6.1e-12 74.3 59 59.3
ATR0584G122 Amborella trichopoda HOM05D003103 ORTHO05D003999 6.1e-12 74.3 62 59.7
HanXRQChr07g0187961 Helianthus annuus HOM05D003103 ORTHO05D003999 6.1e-12 74.3 65 53.8
HPP92_009260 Vanilla planifolia HOM05D003103 ORTHO05D003999 6.1e-12 74.3 63 55.6
arahy.Tifrunner.gnm1.ann1.6SC4JI Arachis hypogaea HOM05D003103 ORTHO05D003999 8.0e-12 73.9 80 50.0
Duzib264G0053 Durio zibethinus HOM05D003103 ORTHO05D003999 8.0e-12 73.9 65 55.4
SalBow5G5600 Salvia bowleyana HOM05D003103 ORTHO05D003999 8.0e-12 73.9 74 52.7
Glyma.17G172500 Glycine max HOM05D003103 ORTHO05D003999 1.0e-11 73.6 84 47.6
Duzib147G0775 Durio zibethinus HOM05D003103 ORTHO05D003999 1.4e-11 73.2 65 55.4
MCO01G563 Micromonas commoda HOM05D003103 ORTHO05D003999 1.4e-11 73.2 63 49.2
PRCOL_00006024 Prasinoderma coloniale HOM05D003103 ORTHO05D003999 2.3e-11 72.4 62 53.2
RcHm_v2.0_Chr1g0342971 Rosa chinensis HOM05D003103 ORTHO05D003999 2.3e-11 72.4 65 55.4
Ca_24758_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 4.0e-11 71.6 63 55.6
Aa31LG7G13580 Aethionema arabicum HOM05D003103 ORTHO05D003999 8.8e-11 70.5 71 53.5
A03p64960 Brassica napus HOM05D003103 ORTHO05D003999 8.8e-11 70.5 71 52.1
C07p62250 Brassica napus HOM05D003103 ORTHO05D003999 8.8e-11 70.5 71 52.1
BolC7t46641H Brassica oleracea HOM05D003103 ORTHO05D003999 8.8e-11 70.5 71 52.1
BraA03t15555Z Brassica rapa HOM05D003103 ORTHO05D003999 8.8e-11 70.5 71 52.1
Rhsim08G0099700 Rhododendron simsii HOM05D003103 ORTHO05D003999 1.2e-10 70.1 56 57.1
Sabra07G0040400 Salix brachista HOM05D003103 ORTHO05D003999 1.2e-10 70.1 101 43.6
HPP92_025031 Vanilla planifolia HOM05D003103 ORTHO05D003999 2.0e-10 69.3 62 54.8
CBR_g54878 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-09 66.6 61 49.2
FAN23G0049 Fragaria x ananassa HOM05D003103 ORTHO05D003999 6.6e-06 54.3 63 50.8


User provided reference genes

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