Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 2.1e-106 389.0 200 100.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.0e-44 184.1 143 61.5
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.0e-44 184.1 156 56.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.8e-44 181.4 181 54.1
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.3e-42 177.2 151 57.6
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.1e-41 174.1 169 51.5
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.8e-41 173.3 168 51.8
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.4e-41 172.9 163 54.6
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 4.1e-41 172.2 162 54.9
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 5.4e-41 171.8 165 53.3
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.4e-41 171.8 162 54.3
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 7.0e-41 171.4 163 55.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.0e-41 171.4 166 53.6
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.2e-41 171.0 149 55.0
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.2e-40 170.6 163 54.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.6e-40 170.2 162 53.7
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.6e-40 170.2 162 51.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.0e-40 169.9 162 54.9
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.0e-40 169.9 162 54.3
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.0e-40 169.9 151 54.3
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.7e-40 169.5 167 52.1
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.5e-40 169.1 149 56.4
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 5.9e-40 168.3 162 53.1
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.9e-40 168.3 160 51.9
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 7.8e-40 167.9 162 52.5
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.0e-39 167.5 162 52.5
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.3e-39 167.2 149 57.0
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.3e-39 167.2 159 54.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.7e-39 166.8 149 56.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.9e-39 166.0 149 56.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.9e-39 166.0 161 52.2
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 3.8e-39 165.6 157 54.1
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.8e-39 165.6 166 50.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 5.0e-39 165.2 166 50.6
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 5.0e-39 165.2 167 50.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 6.6e-39 164.9 157 53.5
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.6e-39 164.9 162 51.9
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.6e-39 164.5 169 52.1
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.6e-39 164.5 169 52.1
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 8.6e-39 164.5 149 55.0
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 8.6e-39 164.5 162 50.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 8.6e-39 164.5 161 54.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 8.6e-39 164.5 161 51.6
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.1e-38 164.1 162 52.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.5e-38 163.7 150 50.7
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-38 163.7 169 51.5
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.5e-38 163.7 169 51.5
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.5e-38 163.7 157 54.1
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.5e-38 163.7 163 51.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.5e-38 163.7 181 49.2
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.9e-38 163.3 161 54.0
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.5e-38 162.9 164 51.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.5e-38 162.9 156 53.2
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.5e-38 162.9 170 52.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.5e-38 162.9 166 52.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 3.3e-38 162.5 149 52.3
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-38 162.2 169 50.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 4.3e-38 162.2 162 48.1
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.3e-38 162.2 162 51.9
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 5.6e-38 161.8 172 48.8
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 5.6e-38 161.8 172 48.8
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 5.6e-38 161.8 162 50.0
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 5.6e-38 161.8 162 50.6
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 5.6e-38 161.8 166 53.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 7.3e-38 161.4 166 51.8
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.3e-38 161.4 161 50.9
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 9.5e-38 161.0 168 50.0
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.2e-37 160.6 149 53.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-37 160.6 187 46.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-37 160.6 150 53.3
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.2e-37 160.6 162 51.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.2e-37 160.6 156 52.6
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.6e-37 160.2 150 54.7
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.6e-37 160.2 152 53.9
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.1e-37 159.8 167 50.9
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.1e-37 159.8 149 53.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.8e-37 159.5 165 49.1
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.8e-37 159.5 152 53.9
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.8e-37 159.5 162 50.0
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.8e-37 159.5 152 52.0
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.6e-37 159.1 165 49.1
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 4.7e-37 158.7 165 49.1
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.7e-37 158.7 162 51.2
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.7e-37 158.7 162 51.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.7e-37 158.7 162 51.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.7e-37 158.7 162 51.9
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 4.7e-37 158.7 166 48.2
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.1e-37 158.3 163 51.5
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.1e-37 158.3 176 47.7
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 8.0e-37 157.9 166 51.8
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 8.0e-37 157.9 168 49.4
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-36 157.5 177 48.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.0e-36 157.5 162 52.5
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.0e-36 157.5 152 52.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.4e-36 157.1 149 51.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.4e-36 157.1 167 49.7
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.8e-36 156.8 149 51.7
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.8e-36 156.8 152 52.0
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.3e-36 156.4 156 51.9
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.3e-36 156.4 152 52.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.3e-36 156.4 169 50.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 3.0e-36 156.0 145 55.2
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.0e-36 156.0 152 52.0
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 4.0e-36 155.6 149 53.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.0e-36 155.6 168 48.8
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.8e-36 154.8 169 47.3
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.8e-36 154.8 150 50.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 6.8e-36 154.8 149 53.0
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 6.8e-36 154.8 170 48.8
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 8.9e-36 154.5 166 48.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.2e-35 154.1 169 46.7
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.2e-35 154.1 162 51.2
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-35 153.7 159 51.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.6e-35 152.9 142 53.5
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.6e-35 152.9 149 49.0
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.6e-35 152.9 149 51.7
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.4e-35 152.5 149 48.3
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.4e-35 152.5 149 48.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 3.4e-35 152.5 149 51.0
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 5.8e-35 151.8 149 50.3
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.8e-35 151.8 150 51.3
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 7.5e-35 151.4 153 51.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 7.5e-35 151.4 162 48.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 8.3e-34 147.9 154 52.6
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.8e-33 146.7 152 47.4
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 3.2e-33 146.0 179 45.8
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.2e-33 146.0 140 49.3
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.2e-33 146.0 152 50.0
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 5.4e-33 145.2 179 44.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 5.4e-33 145.2 171 43.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 7.0e-33 144.8 135 54.1
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.7e-32 142.9 170 44.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 4.6e-32 142.1 135 54.8
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 6.0e-32 141.7 120 59.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.3e-31 140.6 195 43.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-31 140.6 174 46.0
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 5.0e-31 138.7 119 59.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 6.6e-31 138.3 225 39.1
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 5.6e-30 135.2 167 43.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 3.6e-29 132.5 136 54.4
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.2e-29 131.7 120 54.2
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 6.2e-29 131.7 120 55.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 6.2e-29 131.7 120 54.2
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 8.0e-29 131.3 120 54.2
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.1e-28 129.4 121 54.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.6e-27 126.3 120 50.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.9e-26 122.9 123 54.5
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 8.3e-26 121.3 110 57.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 9.2e-25 117.9 134 47.8
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.6e-24 117.1 109 55.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 8.6e-23 111.3 114 51.8
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.9e-22 110.2 85 62.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.1e-21 106.7 127 48.0
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.4e-19 99.4 107 49.5
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 8.6e-15 84.7 88 44.3
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 9.5e-14 81.3 91 47.3
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.1e-13 80.1 89 46.1
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 5.2e-12 75.5 90 46.7
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.2e-10 70.1 151 34.4


User provided reference genes

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