Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 3.7e-225 784.6 426 100.0
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 3.1e-30 137.1 212 39.6
Pp3c7_26210 Physcomitrium patens HOM05D021038 ORTHO05D009018 1.1e-19 102.1 226 33.2
Pp3c1_6510 Physcomitrium patens HOM05D021038 ORTHO05D009018 7.2e-19 99.4 107 44.9
Pp3c3_2630 Physcomitrium patens HOM05D021038 ORTHO05D009018 1.7e-15 88.2 129 36.4
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 9.1e-14 82.4 104 39.4
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 4.5e-13 80.1 109 39.4
Pp3c4_31070 Physcomitrium patens HOM05D021038 ORTHO05D009018 5.0e-12 76.6 129 35.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 8.5e-12 75.9 113 36.3
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.7e-10 70.1 110 35.5
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 3.0e-09 67.4 109 36.7
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 5.2e-09 66.6 109 34.9
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 5.2e-09 66.6 110 31.8
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 6.8e-09 66.2 109 34.9
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 6.8e-09 66.2 111 37.8
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 8.8e-09 65.9 113 34.5
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.0e-08 64.7 118 34.7
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 2.0e-08 64.7 114 33.3
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 2.0e-08 64.7 113 34.5
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 2.6e-08 64.3 114 35.1
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 3.4e-08 63.9 114 34.2
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 3.4e-08 63.9 109 33.9
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 4.4e-08 63.5 109 33.9
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 5.7e-08 63.2 116 37.1
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 7.5e-08 62.8 109 35.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.3e-07 62.0 98 37.8
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 1.3e-07 62.0 109 32.1
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.3e-07 62.0 110 33.6
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 1.3e-07 62.0 111 34.2
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 2.8e-07 60.8 109 33.0
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.7e-07 60.5 115 30.4
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 3.7e-07 60.5 109 31.2
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 3.7e-07 60.5 109 33.0
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 3.7e-07 60.5 89 38.2
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 4.9e-07 60.1 123 31.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.9e-07 60.1 120 31.7
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 6.3e-07 59.7 106 34.9
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 6.3e-07 59.7 94 38.3
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 8.3e-07 59.3 98 33.7
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 1.1e-06 58.9 112 32.1
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.4e-06 58.5 98 38.8
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.4e-06 58.5 123 30.1
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.4e-06 58.5 91 39.6
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 1.4e-06 58.5 113 31.0
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.4e-06 58.5 110 32.7
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 1.4e-06 58.5 112 32.1
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 1.8e-06 58.2 109 33.0
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.8e-06 58.2 110 31.8
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.8e-06 58.2 97 36.1
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.8e-06 58.2 115 33.9
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.8e-06 58.2 97 37.1
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.8e-06 58.2 113 33.6
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 1.8e-06 58.2 90 37.8
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.8e-06 58.2 115 35.7
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.4e-06 57.8 90 37.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.4e-06 57.8 90 37.8
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 2.4e-06 57.8 90 37.8
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 2.4e-06 57.8 111 34.2
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 2.4e-06 57.8 108 31.5
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 2.4e-06 57.8 109 33.0
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.1e-06 57.4 90 36.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 3.1e-06 57.4 98 36.7
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.1e-06 57.4 119 32.8
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 4.1e-06 57.0 106 33.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 4.1e-06 57.0 94 36.2
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 4.1e-06 57.0 107 35.5
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 4.1e-06 57.0 90 36.7
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.1e-06 57.0 117 35.9
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 5.4e-06 56.6 115 33.9
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 5.4e-06 56.6 107 34.6
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 5.4e-06 56.6 104 32.7
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 5.4e-06 56.6 111 33.3
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 7.0e-06 56.2 95 35.8
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 7.0e-06 56.2 90 37.8
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 9.1e-06 55.8 116 37.9
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 9.1e-06 55.8 110 29.1


User provided reference genes

Program Settings