Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.7e-38 162.2 80 100.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.9e-27 124.4 74 78.4
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.8e-25 118.2 77 68.8
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.8e-25 117.5 78 66.7
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 6.3e-25 117.1 78 67.9
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 8.2e-25 116.7 78 65.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.8e-24 115.5 77 67.5
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.8e-24 115.5 77 71.4
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 65.4
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 65.4
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 66.7
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.4e-24 115.2 78 65.4
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 66.2
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 67.5
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 66.2
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.4e-24 115.2 78 65.4
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 66.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 68.8
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.4e-24 115.2 78 66.7
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 78 65.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 78 65.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 3.1e-24 114.8 78 65.4
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 4.1e-24 114.4 78 65.4
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 4.1e-24 114.4 78 64.1
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 4.1e-24 114.4 78 64.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.1e-24 114.4 77 68.8
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 6.9e-24 113.6 77 64.9
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 9.1e-24 113.2 77 64.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-23 112.8 77 67.5
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.2e-23 112.8 75 64.0
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 62.8
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 67.9
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.0e-23 112.1 78 62.8
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 78 64.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 62.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 65.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 78 64.1
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.4e-23 111.3 75 66.7
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 78 62.8
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 78 64.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 4.5e-23 110.9 78 62.8
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.5e-23 110.9 78 62.8
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.5e-23 110.9 75 66.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 5.9e-23 110.5 77 63.6
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 5.9e-23 110.5 77 63.6
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.9e-23 110.5 65 78.5
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 7.7e-23 110.2 77 61.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 7.7e-23 110.2 78 62.8
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.7e-23 110.2 78 61.5
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.0e-22 109.8 78 62.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.0e-22 109.8 78 65.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.7e-22 109.0 78 62.8
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.2e-22 108.6 78 61.5
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.2e-22 108.6 77 62.3
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.9e-22 108.2 76 64.5
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.5e-22 107.1 78 60.3
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 6.5e-22 107.1 78 61.5
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 8.5e-22 106.7 77 59.7
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 8.5e-22 106.7 78 60.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 8.5e-22 106.7 67 68.7
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 8.5e-22 106.7 67 68.7
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 65.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 60.5
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 60.5
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 61.8
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 78 59.0
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.9e-21 105.5 78 62.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.9e-21 105.5 78 62.8
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 74 60.8
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 74 60.8
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 3.2e-21 104.8 77 59.7
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 3.2e-21 104.8 76 63.2
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 3.2e-21 104.8 78 59.0
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 77 59.7
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 77 58.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 4.2e-21 104.4 78 60.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 5.5e-21 104.0 78 60.3
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 5.5e-21 104.0 77 59.7
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 7.2e-21 103.6 78 57.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 7.2e-21 103.6 75 62.7
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 7.2e-21 103.6 79 59.5
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 7.2e-21 103.6 75 58.7
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.4e-21 103.2 85 57.6
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 9.4e-21 103.2 77 58.4
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 9.4e-21 103.2 66 66.7
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.2e-20 102.8 78 59.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.2e-20 102.8 78 56.4
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.1e-20 102.1 65 66.2
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.1e-20 102.1 62 71.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 78 56.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 59.5
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 6.1e-20 100.5 78 59.0
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 7.9e-20 100.1 79 58.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 7.9e-20 100.1 65 66.2
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.0e-19 99.8 78 57.7
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.4e-19 99.4 78 55.1
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-19 99.4 78 56.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.8e-19 99.0 67 62.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.3e-19 98.6 76 57.9
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 56.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 5.1e-19 97.4 66 66.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 6.7e-19 97.1 76 56.6
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 6.7e-19 97.1 76 56.6
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 6.7e-19 97.1 76 56.6
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 6.7e-19 97.1 76 57.9
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 6.7e-19 97.1 78 55.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 8.8e-19 96.7 64 64.1
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.1e-18 96.3 61 67.2
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.1e-18 96.3 80 55.0
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.1e-18 96.3 78 53.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.5e-18 95.9 76 55.3
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.5e-18 95.9 76 55.3
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.5e-18 95.9 64 62.5
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.5e-18 95.9 78 55.1
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.5e-18 95.9 76 57.9
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.0e-18 95.5 76 55.3
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 2.0e-18 95.5 59 71.2
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-18 95.1 80 58.8
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.3e-18 94.7 61 65.6
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.3e-18 94.7 64 64.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 9.7e-18 93.2 75 56.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 9.7e-18 93.2 75 56.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 9.7e-18 93.2 75 56.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 9.7e-18 93.2 75 56.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 9.7e-18 93.2 60 66.7
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.8e-17 90.9 73 57.5
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.8e-17 90.9 73 57.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.1e-16 89.7 61 60.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.4e-16 89.4 78 50.0
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 4.1e-16 87.8 56 66.1
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 7.0e-16 87.0 81 48.1
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.1e-16 86.7 67 56.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.6e-15 85.9 54 66.7
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 4.5e-15 84.3 54 63.0
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 7.7e-15 83.6 62 54.8
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.3e-14 82.8 57 61.4
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.3e-14 82.8 79 48.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.9e-14 81.6 62 53.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.1e-13 79.7 53 58.5
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.7e-12 75.1 50 72.0
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 2.7e-12 75.1 69 47.8
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.4e-11 72.8 73 46.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 7.0e-08 60.5 72 38.9
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.2e-07 59.7 68 39.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-06 55.8 68 38.2
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 6.5e-06 53.9 77 37.7
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 8.5e-06 53.5 74 39.2


User provided reference genes

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