Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 2514.2 1268 100.0
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1832.0 1273 72.3
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1771.9 1280 70.2
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1701.0 1272 67.9
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1698.7 1149 74.9
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1691.4 1271 67.3
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1666.7 1276 68.0
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1653.6 1273 66.4
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1653.3 1274 66.2
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1650.6 1273 65.4
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1647.1 1274 65.6
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1641.7 1270 65.9
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1641.3 1273 65.6
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1640.6 1271 65.3
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1640.6 1289 65.3
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1637.9 1289 65.0
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1637.5 1274 65.4
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1637.1 1272 65.6
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1637.1 1269 65.3
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1635.5 1271 65.4
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1635.2 1274 65.3
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1632.5 1272 65.3
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1632.5 1272 65.4
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1632.1 1274 65.5
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1631.7 1266 65.9
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1630.9 1272 65.4
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1630.5 1274 65.3
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1630.2 1274 65.3
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1630.2 1272 65.0
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1628.6 1272 65.0
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1627.8 1269 64.7
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1627.5 1277 65.2
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1627.1 1273 65.0
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1626.7 1272 65.6
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1626.3 1274 65.5
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1625.9 1274 64.2
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1623.2 1272 64.5
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1620.1 1270 64.3
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1615.9 1299 63.8
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1615.9 1225 67.2
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1615.5 1273 64.6
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1614.4 1269 65.0
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1614.0 1272 64.8
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1613.6 1273 64.7
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1610.1 1273 64.6
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1609.0 1268 64.7
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1606.7 1268 64.4
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1605.1 1268 64.9
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1605.1 1272 64.6
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1604.7 1272 64.5
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1600.9 1236 65.7
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1599.3 1269 63.8
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1597.8 1272 64.4
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1595.9 1272 64.2
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1595.5 1286 63.8
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1593.6 1277 64.4
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1593.2 1278 64.3
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1592.8 1267 64.2
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1592.0 1271 64.0
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1586.6 1277 64.1
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1586.6 1278 63.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1586.6 1260 64.2
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1586.2 1277 63.9
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1585.9 1274 63.5
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1584.7 1269 63.7
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1584.3 1275 64.1
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1580.5 1267 64.1
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1580.5 1285 63.4
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1575.8 1278 62.4
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1575.1 1271 63.8
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1574.3 1263 63.7
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1572.8 1278 63.9
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1572.4 1334 61.8
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1569.7 1274 63.7
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1568.5 1277 63.7
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1567.7 1277 63.6
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1565.8 1304 62.3
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1565.1 1275 63.7
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1565.1 1275 63.6
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1565.1 1273 63.6
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1562.0 1274 62.9
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1556.2 1276 62.2
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1555.8 1219 65.8
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1555.0 1285 63.1
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1550.4 1275 63.0
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1549.6 1220 64.8
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1548.1 1276 62.8
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1545.8 1236 64.7
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1536.9 1305 61.5
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1526.1 1218 65.4
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1520.8 1239 63.5
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1514.2 1389 58.0
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1513.0 1222 63.1
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1506.9 1278 61.7
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1503.4 1260 62.5
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1482.2 1216 62.4
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1478.8 1387 57.3
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1474.9 1270 60.2
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1457.6 1078 68.5
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1442.9 1094 66.7
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1442.2 1271 60.1
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1426.8 1064 67.4
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1408.7 1152 62.7
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1404.8 1186 62.1
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1393.6 1072 65.3
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1390.2 1148 62.7
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1357.4 1272 57.3
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1353.2 1156 61.2
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1342.0 1086 63.3
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1300.4 1387 52.0
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1266.1 1087 61.2
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1179.5 1022 61.4
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1147.9 938 64.0
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1135.6 846 68.2
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.1e-301 1040.4 915 60.9
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 4.6e-295 1018.5 855 61.5
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 1.5e-269 933.7 1088 49.8
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.6e-263 913.7 1088 49.4
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 6.0e-255 885.2 927 53.5
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 7.4e-253 878.2 1019 50.1
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.2e-248 862.8 725 61.4
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.3e-228 797.7 736 57.2
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.2e-197 694.9 539 66.0
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.6e-197 693.7 874 46.3
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 5.6e-176 622.9 1460 32.1
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-174 618.2 533 61.0
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.2e-149 535.4 363 72.5
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 7.4e-144 516.2 447 60.0
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 2.6e-141 507.7 645 47.3
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.7e-106 390.6 266 74.1
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.1e-98 365.2 317 59.9
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.7e-95 355.5 416 51.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 4.5e-85 320.9 304 53.6
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.5e-85 320.9 277 62.1
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 2.9e-84 318.2 209 73.2
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 5.2e-81 307.4 209 70.3
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 2.6e-80 305.1 183 78.1
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 7.8e-69 266.9 206 63.6
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.0e-68 265.0 345 43.8
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 1.6e-66 259.2 343 43.7
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 1.1e-65 256.5 171 69.0
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 1.8e-49 202.6 442 33.3
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 9.9e-48 196.8 137 71.5
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 7.1e-46 190.7 138 65.9
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 4.8e-42 177.9 125 68.0
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 8.4e-39 167.2 187 50.3
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.8e-34 152.1 132 56.1
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 3.6e-34 151.8 170 47.1
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 4.8e-34 151.4 451 28.8
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.1e-33 150.2 170 48.2
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 5.3e-33 147.9 445 29.0
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 1.5e-32 146.4 184 45.1
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 1.4e-30 139.8 440 28.4
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 2.8e-26 125.6 103 60.2
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 4.8e-26 124.8 157 49.7
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-24 117.5 110 52.7
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-24 117.5 110 52.7
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-24 117.5 110 52.7
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.1e-22 110.9 103 51.5
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 6.0e-21 107.8 89 59.6
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.9e-19 102.8 73 65.8
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 2.5e-19 102.4 94 55.3
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 7.4e-19 100.9 76 63.2
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 2.1e-18 99.4 94 52.1
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.1e-18 99.4 76 61.8
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.8e-18 99.0 73 64.4
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.7e-18 98.6 76 60.5
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 1.3e-15 90.1 61 68.9
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.9e-15 89.0 151 43.0
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 1.4e-14 86.7 50 76.0
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.9e-14 86.3 139 41.7
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 1.6e-13 83.2 103 49.5
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.0e-12 79.0 75 53.3
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.9e-12 78.6 118 41.5
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 4.3e-11 75.1 44 70.5
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 2.4e-09 69.3 45 68.9
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 3.1e-09 68.9 46 71.7
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 3.1e-09 68.9 46 67.4
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 3.4e-08 65.5 44 75.0
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 2.9e-07 62.4 251 26.7
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.8e-07 62.0 126 38.1


User provided reference genes

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