Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.8e-76 287.7 143 100.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.3e-40 168.7 126 62.7
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.2e-39 166.8 123 61.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.4e-38 163.3 123 61.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 4.0e-38 161.8 124 60.5
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.0e-38 161.8 124 59.7
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.0e-38 161.8 123 62.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 6.8e-38 161.0 123 59.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-37 160.2 124 60.5
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-37 160.2 124 59.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.2e-37 160.2 138 55.1
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.0e-37 159.5 124 61.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.0e-37 159.5 122 60.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.6e-37 159.1 124 61.3
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.4e-37 158.7 124 61.3
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 3.4e-37 158.7 124 60.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 3.4e-37 158.7 124 60.5
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.7e-37 157.9 124 58.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 5.7e-37 157.9 121 61.2
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.7e-37 157.9 124 59.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 7.5e-37 157.5 126 59.5
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 7.5e-37 157.5 142 53.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 7.5e-37 157.5 124 60.5
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 9.8e-37 157.1 124 60.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.3e-36 156.8 124 58.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-36 156.8 124 60.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.3e-36 156.8 124 58.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.3e-36 156.8 124 59.7
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.7e-36 156.4 126 58.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.7e-36 156.4 126 57.1
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-36 156.4 124 59.7
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-36 156.0 124 59.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-36 156.0 123 58.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.2e-36 156.0 123 59.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.2e-36 156.0 124 58.9
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.2e-36 156.0 125 59.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.2e-36 156.0 144 52.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.8e-36 155.6 123 58.5
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 2.8e-36 155.6 124 56.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.8e-36 155.6 124 58.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.7e-36 155.2 124 60.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.7e-36 155.2 124 60.5
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.7e-36 155.2 124 58.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.7e-36 155.2 124 58.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 3.7e-36 155.2 124 59.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.9e-36 154.8 124 58.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.9e-36 154.8 124 57.3
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 6.3e-36 154.5 123 57.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.3e-36 154.5 123 57.7
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 6.3e-36 154.5 124 57.3
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.3e-36 154.5 124 58.1
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-35 153.7 124 57.3
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-35 153.7 126 56.3
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.1e-35 153.7 139 53.2
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.4e-35 153.3 123 56.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.8e-35 152.9 124 56.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-35 152.9 123 56.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.8e-35 152.9 124 58.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.8e-35 152.9 124 58.9
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.4e-35 152.5 124 58.9
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.4e-35 152.5 124 56.5
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.4e-35 152.5 124 56.5
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.4e-35 152.5 124 57.3
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-35 152.1 124 58.9
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-35 152.1 124 58.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.1e-35 152.1 124 57.3
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-35 152.1 124 56.5
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.1e-35 152.1 124 58.1
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 4.1e-35 151.8 124 56.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 5.4e-35 151.4 124 58.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 5.4e-35 151.4 123 59.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 5.4e-35 151.4 123 57.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 5.4e-35 151.4 124 58.1
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 7.0e-35 151.0 124 55.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 7.0e-35 151.0 124 55.6
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 7.0e-35 151.0 124 58.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 9.2e-35 150.6 123 56.1
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.2e-34 150.2 124 55.6
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 54.8
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 57.3
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 54.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 57.3
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 58.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 57.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.0e-34 149.4 124 55.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.7e-34 149.1 124 56.5
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.7e-34 149.1 124 56.5
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.7e-34 149.1 124 56.5
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.5e-34 148.7 124 54.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.5e-34 148.7 124 54.8
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.5e-34 148.7 124 54.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.5e-34 148.7 124 58.1
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 4.5e-34 148.3 124 56.5
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.9e-34 147.9 124 55.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.9e-34 147.9 124 57.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 5.9e-34 147.9 122 56.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 5.9e-34 147.9 121 55.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 7.8e-34 147.5 124 57.3
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-33 146.7 124 54.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.3e-33 146.7 123 56.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.7e-33 146.4 124 56.5
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.0e-33 144.8 125 54.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 5.0e-33 144.8 117 57.3
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 5.0e-33 144.8 124 54.0
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 8.6e-33 144.1 139 51.1
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.6e-33 144.1 125 57.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-32 143.7 131 51.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.5e-32 143.3 157 47.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.3e-32 141.7 126 56.3
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 5.6e-32 141.4 137 51.1
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 7.3e-32 141.0 114 56.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-31 140.2 122 55.7
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.7e-31 138.3 136 50.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 6.1e-31 137.9 118 54.2
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 8.0e-31 137.5 160 46.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 8.0e-31 137.5 115 54.8
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 5.2e-30 134.8 165 44.2
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.2e-30 134.8 125 52.8
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 8.9e-30 134.0 136 49.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.5e-29 133.3 175 42.3
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.0e-29 132.9 118 54.2
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.0e-29 132.9 113 56.6
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-28 129.4 117 55.6
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.7e-28 128.6 131 50.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 7.0e-27 124.4 187 38.5
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-26 123.6 100 56.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.9e-24 116.3 211 34.6
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.2e-21 107.1 87 58.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-21 106.7 110 50.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.5e-21 106.7 113 44.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.7e-20 103.2 103 43.7
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.2e-20 102.8 76 60.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.1e-19 98.6 78 56.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 7.0e-19 97.8 73 63.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 8.6e-17 90.9 76 55.3
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.1e-16 90.5 73 56.2
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.2e-15 87.0 76 56.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.0e-14 82.0 69 53.6
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.7e-12 76.6 65 53.8
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.9e-11 73.2 57 57.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.7e-10 69.3 51 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 6.2e-07 58.2 54 51.9


User provided reference genes

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