Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 2.5e-202 708.8 407 100.0
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 4.1e-64 249.6 423 44.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 6.6e-54 215.7 372 43.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 3.6e-52 209.9 322 43.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.2e-52 209.1 340 45.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.2e-52 209.1 367 42.2
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.8e-51 207.6 339 42.2
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 3.1e-51 206.8 422 39.6
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 4.0e-51 206.5 321 45.2
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 5.2e-51 206.1 325 45.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 5.2e-51 206.1 326 43.9
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.2e-50 204.9 342 41.5
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.0e-50 204.1 422 37.4
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.6e-50 203.8 326 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 9.9e-50 201.8 455 41.5
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.9e-50 201.8 335 43.6
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 9.9e-50 201.8 317 43.2
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.7e-49 201.1 320 45.0
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.2e-49 200.7 445 41.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.2e-49 200.7 337 42.4
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.2e-49 200.7 328 44.2
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 2.9e-49 200.3 425 41.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 2.9e-49 200.3 329 43.2
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 4.9e-49 199.5 430 37.2
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 8.3e-49 198.7 327 43.4
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.9e-48 197.6 340 41.5
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.4e-48 197.2 414 38.4
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.2e-48 196.8 326 43.3
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.2e-48 196.8 325 45.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 4.1e-48 196.4 325 44.6
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.4e-48 196.1 360 40.8
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 7.1e-48 195.7 328 41.8
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 7.1e-48 195.7 325 44.6
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 9.2e-48 195.3 343 42.0
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.2e-47 194.9 325 44.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.1e-47 194.1 328 41.5
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 4.6e-47 193.0 333 41.7
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.8e-47 192.2 355 41.4
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 7.8e-47 192.2 333 41.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.0e-46 191.8 356 42.4
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.0e-46 191.8 426 36.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.0e-46 190.3 323 42.4
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.0e-46 190.3 422 38.4
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 5.1e-46 189.5 347 40.1
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 6.6e-46 189.1 332 40.4
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 8.6e-46 188.7 310 41.3
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.1e-45 188.3 419 39.9
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.5e-45 188.0 343 41.4
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.9e-45 187.6 338 41.7
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.9e-45 187.6 315 42.2
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.5e-45 187.2 331 40.8
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.5e-45 187.2 343 40.8
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 3.3e-45 186.8 349 42.1
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 9.6e-45 185.3 315 41.3
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.2e-44 184.9 402 40.3
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.8e-44 183.7 329 42.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 2.8e-44 183.7 331 41.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.1e-44 182.2 319 39.2
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 5.2e-43 179.5 285 42.8
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 5.2e-43 179.5 355 40.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.9e-43 178.7 314 39.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 8.9e-43 178.7 368 38.3
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.2e-42 178.3 421 38.5
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.6e-42 177.2 378 38.1
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 3.4e-42 176.8 282 40.4
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 3.4e-42 176.8 325 41.5
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 7.6e-42 175.6 318 39.9
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 2.9e-41 173.7 334 38.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.1e-40 171.8 315 41.3
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-40 171.4 315 40.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-40 171.0 404 35.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.4e-40 170.6 357 38.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.2e-40 170.2 376 38.3
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 7.1e-40 169.1 329 36.8
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 9.3e-40 168.7 293 40.6
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.2e-39 168.3 278 42.1
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.6e-39 167.9 386 38.3
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.6e-39 167.9 278 41.4
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.6e-39 166.4 320 40.3
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.6e-39 166.4 320 40.3
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.0e-38 165.2 341 37.8
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.3e-38 164.9 222 45.5
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 2.3e-38 164.1 283 42.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.1e-38 162.9 346 36.7
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.1e-38 162.9 336 36.9
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 5.1e-38 162.9 320 37.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-37 161.4 320 39.4
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.9e-37 161.0 300 37.7
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.5e-37 160.6 287 42.5
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.5e-37 160.6 271 39.9
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.3e-37 160.2 320 39.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 5.6e-37 159.5 274 42.0
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.6e-37 159.5 332 37.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 7.3e-37 159.1 399 39.3
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.3e-36 158.3 324 37.3
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.6e-36 157.9 233 43.3
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 2.1e-36 157.5 275 40.0
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.1e-36 157.5 271 40.6
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.6e-36 156.8 320 39.4
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 3.6e-36 156.8 313 40.9
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 6.2e-36 156.0 190 45.8
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 8.1e-36 155.6 289 40.1
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 8.1e-36 155.6 320 37.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-35 155.2 288 39.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.1e-35 155.2 288 39.9
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 6.9e-35 152.5 294 38.4
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.5e-34 151.4 281 39.1
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.0e-34 151.0 352 37.2
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 7.6e-34 149.1 224 42.9
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 9.9e-34 148.7 235 41.3
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.1e-32 145.2 322 36.6
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.1e-32 145.2 304 37.8
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.2e-32 143.3 291 38.8
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.3e-30 138.3 234 39.7
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.9e-29 134.4 191 44.0
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.3e-28 131.7 288 35.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 6.2e-28 129.4 289 40.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.2e-28 129.4 209 43.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.4e-27 127.5 394 34.3
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.4e-27 127.5 382 30.6
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 4.5e-26 123.2 300 35.3
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 5.8e-26 122.9 216 38.4
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.9e-26 122.1 187 40.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.7e-25 121.3 327 33.3
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.9e-24 117.9 183 42.1
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.2e-24 117.1 194 40.7
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.2e-23 115.2 120 48.3
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 5.1e-22 109.8 234 35.5
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.5e-21 108.2 99 56.6
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.1e-20 104.4 72 66.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.8e-20 103.2 185 36.2
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.4e-19 101.7 173 36.4
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.1e-19 100.5 90 57.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 5.3e-19 99.8 197 36.0
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-18 98.6 66 60.6
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.6e-18 97.4 66 63.6
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.6e-18 97.4 90 56.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-17 95.5 66 62.1
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.5e-16 90.9 160 40.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.2e-15 88.6 97 46.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.6e-15 88.2 280 33.9
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 6.0e-15 86.3 86 54.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 5.3e-11 73.2 179 33.0
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 5.3e-11 73.2 129 43.4
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.2e-09 67.8 411 27.0
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.2e-08 63.9 244 29.1
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.2e-08 63.5 134 38.1
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 6.7e-06 56.2 147 36.7


User provided reference genes

Program Settings