Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 4.7e-205 717.6 359 100.0
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 3.1e-87 326.2 336 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 7.5e-86 321.6 326 53.1
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 2.1e-80 303.5 341 50.7
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 3.1e-79 299.7 328 51.8
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.2e-77 293.5 349 47.6
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 3.7e-77 292.7 325 48.9
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 3.7e-77 292.7 324 50.9
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 8.3e-77 291.6 320 50.3
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.9e-76 290.4 336 50.3
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 2.4e-76 290.0 329 48.0
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 2.4e-76 290.0 339 48.4
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 4.1e-76 289.3 329 48.6
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 5.4e-76 288.9 338 47.6
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 7.1e-76 288.5 347 46.1
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 7.1e-76 288.5 332 48.2
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 9.2e-76 288.1 344 47.4
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 1.6e-75 287.3 337 48.1
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.6e-75 287.3 334 47.9
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 2.7e-75 286.6 331 49.2
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 2.7e-75 286.6 335 48.4
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 3.5e-75 286.2 331 48.6
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 3.5e-75 286.2 333 48.3
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 4.6e-75 285.8 336 48.2
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 4.6e-75 285.8 338 47.9
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 6.0e-75 285.4 330 48.8
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 7.8e-75 285.0 333 48.3
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 7.8e-75 285.0 329 49.2
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 1.0e-74 284.6 333 48.3
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 1.0e-74 284.6 334 48.5
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.3e-74 284.3 333 48.3
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 1.3e-74 284.3 333 48.3
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 1.3e-74 284.3 332 48.2
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 1.3e-74 284.3 333 48.6
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.3e-74 284.3 324 47.5
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 1.3e-74 284.3 333 48.6
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.7e-74 283.9 328 48.8
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 1.7e-74 283.9 332 47.9
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 2.3e-74 283.5 338 47.9
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 3.0e-74 283.1 328 50.3
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 3.0e-74 283.1 336 47.6
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 3.0e-74 283.1 333 47.7
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 3.9e-74 282.7 333 47.7
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 3.9e-74 282.7 332 47.9
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 3.9e-74 282.7 339 46.9
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 3.9e-74 282.7 332 47.6
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 3.9e-74 282.7 343 47.2
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 5.1e-74 282.3 332 48.2
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 5.1e-74 282.3 329 48.6
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.1e-73 281.2 332 47.9
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.1e-73 281.2 321 49.2
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 1.9e-73 280.4 333 47.4
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 1.9e-73 280.4 331 48.3
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 2.5e-73 280.0 334 48.8
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 2.5e-73 280.0 324 48.5
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 2.5e-73 280.0 328 48.5
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 3.3e-73 279.6 333 48.3
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 3.3e-73 279.6 340 47.1
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 5.6e-73 278.9 341 46.0
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 9.5e-73 278.1 324 45.7
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 9.5e-73 278.1 321 49.8
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 1.6e-72 277.3 338 47.9
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 1.6e-72 277.3 351 46.4
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 2.1e-72 276.9 333 46.8
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 3.6e-72 276.2 335 46.0
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 3.6e-72 276.2 321 49.8
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 4.7e-72 275.8 339 46.0
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 4.7e-72 275.8 324 47.2
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 6.2e-72 275.4 330 47.6
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 6.2e-72 275.4 320 49.1
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 8.1e-72 275.0 332 45.2
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 1.1e-71 274.6 333 46.2
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 1.4e-71 274.2 335 47.5
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.8e-71 273.9 334 47.0
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 1.8e-71 273.9 333 45.9
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 2.4e-71 273.5 327 47.7
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 3.1e-71 273.1 331 47.1
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 3.1e-71 273.1 320 48.4
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 5.2e-71 272.3 334 47.6
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 5.2e-71 272.3 324 47.2
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.2e-71 272.3 324 46.9
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 5.2e-71 272.3 329 47.4
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 8.9e-71 271.6 321 48.3
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 8.9e-71 271.6 323 47.4
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.5e-70 270.8 334 47.0
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.5e-70 270.8 324 49.4
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.0e-70 270.4 327 47.1
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 2.6e-70 270.0 334 45.5
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 7.6e-70 268.5 330 47.0
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 1.7e-69 267.3 333 45.3
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.9e-69 266.5 279 53.0
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 8.4e-69 265.0 324 44.8
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 3.2e-68 263.1 359 44.3
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.6e-67 260.8 341 45.5
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 2.1e-67 260.4 333 46.2
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 2.1e-67 260.4 350 44.9
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 7.8e-67 258.5 330 46.1
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 2.1e-64 250.4 354 43.5
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 2.0e-62 243.8 328 45.4
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.2e-61 240.4 302 46.0
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 3.5e-59 233.0 249 53.0
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 7.8e-59 231.9 352 41.8
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 2.4e-55 220.3 260 46.5
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 7.6e-54 215.3 332 39.2
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.2e-53 213.8 209 51.7
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 8.4e-53 211.8 340 37.9
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.1e-52 211.5 207 50.7
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 3.2e-52 209.9 339 37.8
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 5.8e-46 189.1 193 51.3
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.5e-38 162.9 160 53.1
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 3.8e-37 159.8 169 49.1
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 5.3e-31 139.4 177 47.5
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 6.9e-31 139.0 189 45.5
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 2.6e-22 110.5 132 43.2
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 2.5e-20 104.0 362 25.4
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 2.5e-20 104.0 297 30.3
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 3.0e-18 97.1 300 30.3
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 6.7e-18 95.9 323 28.8
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.1e-17 95.1 105 48.6
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.1e-17 95.1 206 30.1
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 2.4e-15 87.4 305 24.6
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 4.1e-15 86.7 94 54.3
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 7.7e-14 82.4 81 53.1
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 7.7e-14 82.4 81 53.1
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 2.9e-13 80.5 114 45.6
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 8.5e-13 79.0 277 26.0
PRCOL_00004569 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 3.6e-11 73.6 203 31.5
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 1.5e-09 68.2 319 25.4
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 2.2e-08 64.3 180 32.2
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 2.2e-08 64.3 95 34.7
MCO05G072 Micromonas commoda HOM05D000639 ORTHO05D003485 2.8e-08 63.9 316 24.4
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 2.0e-06 57.8 79 45.6
Os07g0640000 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D007519 2.6e-06 57.4 194 27.3
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 3.5e-06 57.0 41 53.7
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 5.9e-06 56.2 138 31.2
CBR_g3614 Chara braunii HOM05D000639 ORTHO05D004019 5.9e-06 56.2 295 24.1
Psat5g222040 Pisum sativum HOM05D000639 ORTHO05D007519 5.9e-06 56.2 195 30.3


User provided reference genes

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