Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0100 Marchantia polymorpha HOM05D002709 ORTHO05D002914 0.0e+00 1268.4 634 100.0
Mapoly0021s0101 Marchantia polymorpha HOM05D002709 ORTHO05D002914 4.9e-48 196.8 247 48.2
Mapoly0021s0102 Marchantia polymorpha HOM05D002709 ORTHO05D002914 2.2e-40 171.4 150 59.3
Mapoly0031s0076 Marchantia polymorpha HOM05D002709 ORTHO05D002914 6.7e-29 133.3 189 39.7
Mapoly0031s0075 Marchantia polymorpha HOM05D002709 ORTHO05D002914 3.1e-18 97.8 194 33.0
Mapoly0031s0074 Marchantia polymorpha HOM05D002709 ORTHO05D002914 3.8e-16 90.9 295 28.8
Pp3c5_20560 Physcomitrium patens HOM05D002709 ORTHO05D002914 4.2e-15 87.4 202 33.2
Pp3c6_8660 Physcomitrium patens HOM05D002709 ORTHO05D002914 1.6e-14 85.5 202 33.2
Sabra06G0155400 Salix brachista HOM05D002709 ORTHO05D002914 1.0e-13 82.8 198 30.3
Potri.006G202100 Populus trichocarpa HOM05D002709 ORTHO05D002914 6.7e-13 80.1 199 29.1
ATR0829G155 Amborella trichopoda HOM05D002709 ORTHO05D002914 3.3e-12 77.8 198 30.3
SMO367G0040 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 3.3e-12 77.8 201 28.9
SEGI_18151 Sequoiadendron giganteum HOM05D002709 ORTHO05D002914 3.3e-12 77.8 194 29.4
SMO356G0362 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 9.7e-12 76.3 177 30.5
CDE12G0280 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 1.3e-11 75.9 184 31.5
Ca_18230_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 1.3e-11 75.9 189 28.0
TPR.G23841 Trifolium pratense HOM05D002709 ORTHO05D002914 1.3e-11 75.9 189 28.6
Nitab4.5_0004412g0070 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.7e-11 75.5 197 31.5
Psat7g087680 Pisum sativum HOM05D002709 ORTHO05D002914 3.7e-11 74.3 199 28.6
CDE02G2384 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 4.8e-11 73.9 206 29.1
SalBow4G0249 Salvia bowleyana HOM05D002709 ORTHO05D002914 6.3e-11 73.6 207 29.5
SalBow4G1996 Salvia bowleyana HOM05D002709 ORTHO05D002914 8.2e-11 73.2 207 29.5
Sabra16G0069500 Salix brachista HOM05D002709 ORTHO05D002914 1.4e-10 72.4 196 28.1
BcaB06g28432 Brassica carinata HOM05D002709 ORTHO05D002914 1.8e-10 72.0 189 31.2
CAN.G700.27 Capsicum annuum HOM05D002709 ORTHO05D002914 1.8e-10 72.0 188 31.9
Medtr4g094762 Medicago truncatula HOM05D002709 ORTHO05D002914 1.8e-10 72.0 189 27.0
unitig_43.g31046 Utricularia gibba HOM05D002709 ORTHO05D002914 1.8e-10 72.0 185 27.6
unitig_578.g16500 Utricularia gibba HOM05D002709 ORTHO05D002914 1.8e-10 72.0 185 27.6
Dinv43981 Davidia involucrata HOM05D002709 ORTHO05D002914 3.1e-10 71.2 192 32.8
Potri.016G068500 Populus trichocarpa HOM05D002709 ORTHO05D002914 3.1e-10 71.2 198 27.8
Peaxi162Scf00592g00446 Petunia axillaris HOM05D002709 ORTHO05D002914 5.3e-10 70.5 196 30.6
Atru.chr12.829 Acer truncatum HOM05D002709 ORTHO05D002914 7.0e-10 70.1 188 26.1
arahy.Tifrunner.gnm1.ann1.ALCT10 Arachis hypogaea HOM05D002709 ORTHO05D002914 7.0e-10 70.1 189 29.1
arahy.Tifrunner.gnm1.ann1.UPIP6Z Arachis hypogaea HOM05D002709 ORTHO05D002914 7.0e-10 70.1 189 29.1
ClCG06G008120 Citrullus lanatus HOM05D002709 ORTHO05D002914 7.0e-10 70.1 202 28.7
Glyma.08G089100 Glycine max HOM05D002709 ORTHO05D002914 7.0e-10 70.1 195 28.7
Nn1g02001 Nelumbo nucifera HOM05D002709 ORTHO05D002914 7.0e-10 70.1 192 29.2
Nitab4.5_0000592g0300 Nicotiana tabacum HOM05D002709 ORTHO05D002914 7.0e-10 70.1 182 28.6
Glyma.05G134400 Glycine max HOM05D002709 ORTHO05D002914 9.1e-10 69.7 189 27.5
Lalb_Chr07g0188211 Lupinus albus HOM05D002709 ORTHO05D002914 9.1e-10 69.7 189 28.0
Aa31LG1G7190 Aethionema arabicum HOM05D002709 ORTHO05D002914 2.0e-09 68.6 194 27.8
Sopen01g032710 Solanum pennellii HOM05D002709 ORTHO05D002914 2.0e-09 68.6 190 31.1
CsaV3_2G011050 Cucumis sativus L. HOM05D002709 ORTHO05D002914 2.7e-09 68.2 212 29.7
Phvul.002G187950 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 2.7e-09 68.2 188 27.7
Carub.0001s0553 Capsella rubella HOM05D002709 ORTHO05D002914 3.5e-09 67.8 186 30.6
MELO3C020370.2 Cucumis melo HOM05D002709 ORTHO05D002914 3.5e-09 67.8 213 29.6
HanXRQChr11g0344001 Helianthus annuus HOM05D002709 ORTHO05D002914 3.5e-09 67.8 201 26.9
Gorai.010G191900 Gossypium raimondii HOM05D002709 ORTHO05D002914 4.5e-09 67.4 225 27.1
Manes.07G013000 Manihot esculenta HOM05D002709 ORTHO05D002914 4.5e-09 67.4 200 27.0
PGSC0003DMG400001791 Solanum tuberosum HOM05D002709 ORTHO05D002914 4.5e-09 67.4 190 30.5
Thecc.10G002900 Theobroma cacao HOM05D002709 ORTHO05D002914 4.5e-09 67.4 197 26.9
unitig_85.g27218 Utricularia gibba HOM05D002709 ORTHO05D002914 4.5e-09 67.4 187 27.8
GSVIVG01011330001 Vitis vinifera HOM05D002709 ORTHO05D002914 4.5e-09 67.4 194 27.3
Gohir.D06G164500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 5.9e-09 67.0 225 27.1
Nn3g19279 Nelumbo nucifera HOM05D002709 ORTHO05D002914 5.9e-09 67.0 192 29.7
ECA248G1803 Erigeron canadensis HOM05D002709 ORTHO05D002914 7.7e-09 66.6 196 27.0
Os04g0599300 Oryza sativa ssp. japonica HOM05D002709 ORTHO05D002914 7.7e-09 66.6 201 26.9
VMungo0251G0109 Vigna mungo HOM05D002709 ORTHO05D002914 7.7e-09 66.6 188 27.1
DCAR_029561 Daucus carota HOM05D002709 ORTHO05D002914 1.0e-08 66.2 191 29.3
Duzib128G1731 Durio zibethinus HOM05D002709 ORTHO05D002914 1.0e-08 66.2 197 27.4
Gohir.D06G164400 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.0e-08 66.2 225 27.6
Gorai.010G191800 Gossypium raimondii HOM05D002709 ORTHO05D002914 1.0e-08 66.2 225 27.6
MBI04_g21140_MAGBIO Magnolia biondii HOM05D002709 ORTHO05D002914 1.0e-08 66.2 187 26.7
Peaxi162Scf00592g00445 Petunia axillaris HOM05D002709 ORTHO05D002914 1.0e-08 66.2 187 28.3
Atru.chr8.7 Acer truncatum HOM05D002709 ORTHO05D002914 1.3e-08 65.9 208 26.0
AT1G06170 Arabidopsis thaliana HOM05D002709 ORTHO05D002914 1.3e-08 65.9 185 30.3
COL.COLO4_19335 Corchorus olitorius HOM05D002709 ORTHO05D002914 1.3e-08 65.9 197 27.4
Migut.N01685 Erythranthe guttata HOM05D002709 ORTHO05D002914 1.3e-08 65.9 191 30.9
Migut.N01686 Erythranthe guttata HOM05D002709 ORTHO05D002914 1.3e-08 65.9 184 31.0
Thhalv10009992m.g Eutrema salsugineum HOM05D002709 ORTHO05D002914 1.3e-08 65.9 193 30.1
Gohir.A06G158500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.3e-08 65.9 225 27.6
Solyc01g081100.3 Solanum lycopersicum HOM05D002709 ORTHO05D002914 1.3e-08 65.9 191 29.8
AL1G16130 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 1.7e-08 65.5 186 29.0
C04p60730 Brassica napus HOM05D002709 ORTHO05D002914 1.7e-08 65.5 203 29.6
Lj7A558T39 Lonicera japonica HOM05D002709 ORTHO05D002914 1.7e-08 65.5 178 28.1
Lj4g0001908 Lotus japonicus HOM05D002709 ORTHO05D002914 1.7e-08 65.5 189 28.6
MD02G1240400 Malus domestica HOM05D002709 ORTHO05D002914 1.7e-08 65.5 192 30.2
arahy.Tifrunner.gnm1.ann1.P97QTY Arachis hypogaea HOM05D002709 ORTHO05D002914 2.2e-08 65.1 183 27.9
BcaB03g15789 Brassica carinata HOM05D002709 ORTHO05D002914 2.2e-08 65.1 196 31.1
CANSAT25G2627 Cannabis sativa HOM05D002709 ORTHO05D002914 2.2e-08 65.1 202 28.7
Lsat_1_v5_gn_1_85520 Lactuca sativa HOM05D002709 ORTHO05D002914 2.2e-08 65.1 196 27.0
BcaC02g11210 Brassica carinata HOM05D002709 ORTHO05D002914 2.9e-08 64.7 197 28.4
C04p19190 Brassica napus HOM05D002709 ORTHO05D002914 2.9e-08 64.7 198 28.8
CDE11G0990 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 2.9e-08 64.7 191 30.4
Manes.10G132400 Manihot esculenta HOM05D002709 ORTHO05D002914 2.9e-08 64.7 204 26.5
Medtr4g094758 Medicago truncatula HOM05D002709 ORTHO05D002914 2.9e-08 64.7 189 25.9
Nitab4.5_0004594g0050 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.9e-08 64.7 155 27.7
Aqoxy3G02033 Aquilegia oxysepala HOM05D002709 ORTHO05D002914 3.8e-08 64.3 191 28.3
CARHR005700 Cardamine hirsuta HOM05D002709 ORTHO05D002914 3.8e-08 64.3 244 26.2
Gohir.A06G158600 Gossypium hirsutum HOM05D002709 ORTHO05D002914 3.8e-08 64.3 205 28.3
SalBow4G0764 Salvia bowleyana HOM05D002709 ORTHO05D002914 3.8e-08 64.3 183 29.0
SalBow4G2369 Salvia bowleyana HOM05D002709 ORTHO05D002914 3.8e-08 64.3 183 29.0
Atru.chr6.2608 Acer truncatum HOM05D002709 ORTHO05D002914 5.0e-08 63.9 190 28.4
BolC4t23452H Brassica oleracea HOM05D002709 ORTHO05D002914 5.0e-08 63.9 198 28.8
Ciclev10019669m.g Citrus clementina HOM05D002709 ORTHO05D002914 5.0e-08 63.9 191 26.2
DCAR_025008 Daucus carota HOM05D002709 ORTHO05D002914 5.0e-08 63.9 185 28.6
Lj4g0026815 Lotus japonicus HOM05D002709 ORTHO05D002914 5.0e-08 63.9 186 29.6
SalBow4G3022 Salvia bowleyana HOM05D002709 ORTHO05D002914 5.0e-08 63.9 171 31.0
Sp4g13710 Schrenkiella parvula HOM05D002709 ORTHO05D002914 5.0e-08 63.9 201 29.4
A10p04800 Brassica napus HOM05D002709 ORTHO05D002914 6.5e-08 63.5 193 29.0
BraA10t42748Z Brassica rapa HOM05D002709 ORTHO05D002914 6.5e-08 63.5 193 29.0
QL04p052179 Quercus lobata HOM05D002709 ORTHO05D002914 6.5e-08 63.5 191 28.8
Sc26g0002000 Simmondsia chinensis HOM05D002709 ORTHO05D002914 6.5e-08 63.5 191 27.2
BcaC05g24299 Brassica carinata HOM05D002709 ORTHO05D002914 8.5e-08 63.2 193 29.0
C05p04490 Brassica napus HOM05D002709 ORTHO05D002914 8.5e-08 63.2 193 29.0
BolC5t29220H Brassica oleracea HOM05D002709 ORTHO05D002914 8.5e-08 63.2 193 29.0
FvH4_7g07050 Fragaria vesca HOM05D002709 ORTHO05D002914 8.5e-08 63.2 194 26.3
Actinidia31749 Actinidia chinensis HOM05D002709 ORTHO05D002914 1.1e-07 62.8 198 28.3
EL10Ac3g06800 Beta vulgaris HOM05D002709 ORTHO05D002914 1.1e-07 62.8 198 26.3
CARHR124810 Cardamine hirsuta HOM05D002709 ORTHO05D002914 1.1e-07 62.8 201 29.9
Oeu060682.1 Olea europaea HOM05D002709 ORTHO05D002914 1.1e-07 62.8 185 28.6
Prupe.2G097200 Prunus persica HOM05D002709 ORTHO05D002914 1.1e-07 62.8 192 28.6
vmacro13577 Vaccinium macrocarpon HOM05D002709 ORTHO05D002914 1.1e-07 62.8 195 27.2
Cc02_g26300 Coffea canephora HOM05D002709 ORTHO05D002914 1.5e-07 62.4 186 25.8
Lj7A558T38 Lonicera japonica HOM05D002709 ORTHO05D002914 1.5e-07 62.4 183 27.3
MD02G1240500 Malus domestica HOM05D002709 ORTHO05D002914 1.5e-07 62.4 194 28.9
SalBow4G1080 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.5e-07 62.4 171 29.8
Zm00001eb251650 Zea mays HOM05D002709 ORTHO05D002914 1.5e-07 62.4 199 25.6
Actinidia05815 Actinidia chinensis HOM05D002709 ORTHO05D002914 1.9e-07 62.0 197 26.9
BcaB02g10374 Brassica carinata HOM05D002709 ORTHO05D002914 1.9e-07 62.0 201 28.9
BcaB06g28516 Brassica carinata HOM05D002709 ORTHO05D002914 1.9e-07 62.0 205 28.3
BolC4t27562H Brassica oleracea HOM05D002709 ORTHO05D002914 1.9e-07 62.0 205 28.3
BraA05t20370Z Brassica rapa HOM05D002709 ORTHO05D002914 1.9e-07 62.0 198 28.8
Dinv43535 Davidia involucrata HOM05D002709 ORTHO05D002914 1.9e-07 62.0 195 27.2
Thhalv10016616m.g Eutrema salsugineum HOM05D002709 ORTHO05D002914 1.9e-07 62.0 202 28.7
MD07G1076400 Malus domestica HOM05D002709 ORTHO05D002914 1.9e-07 62.0 193 28.0
Oeu060684.1 Olea europaea HOM05D002709 ORTHO05D002914 1.9e-07 62.0 194 28.9
Oeu060686.1 Olea europaea HOM05D002709 ORTHO05D002914 1.9e-07 62.0 185 28.6
Sed0003196 Sechium edule HOM05D002709 ORTHO05D002914 1.9e-07 62.0 188 28.7
TWI14G0450 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 1.9e-07 62.0 184 28.3
BraA04t17925Z Brassica rapa HOM05D002709 ORTHO05D002914 2.5e-07 61.6 204 29.9
CiPaw.13G149800 Carya illinoinensis HOM05D002709 ORTHO05D002914 2.5e-07 61.6 192 26.6
PSO782G0461 Papaver somniferum HOM05D002709 ORTHO05D002914 2.5e-07 61.6 203 25.6
RcHm_v2.0_Chr1g0337011 Rosa chinensis HOM05D002709 ORTHO05D002914 2.5e-07 61.6 194 26.3
Sp1g04980 Schrenkiella parvula HOM05D002709 ORTHO05D002914 2.5e-07 61.6 193 29.0
AL4G26410 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 3.2e-07 61.2 203 29.6
BcaB02g06818 Brassica carinata HOM05D002709 ORTHO05D002914 3.2e-07 61.2 193 28.5
A04p24050 Brassica napus HOM05D002709 ORTHO05D002914 3.2e-07 61.2 204 29.9
Hund17163 Selenicereus undatus HOM05D002709 ORTHO05D002914 3.2e-07 61.2 207 27.1
Haze_15815 Corylus avellana HOM05D002709 ORTHO05D002914 4.2e-07 60.8 187 28.3
MD07G1076500 Malus domestica HOM05D002709 ORTHO05D002914 4.2e-07 60.8 196 26.5
Os01g0576100 Oryza sativa ssp. japonica HOM05D001604 ORTHO05D001432 4.2e-07 60.8 177 29.9
AT2G31210 Arabidopsis thaliana HOM05D002709 ORTHO05D002914 5.5e-07 60.5 203 29.6
AL4G26440 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 7.2e-07 60.1 202 27.7
A05p14420 Brassica napus HOM05D002709 ORTHO05D002914 7.2e-07 60.1 200 30.0
CARHR124820 Cardamine hirsuta HOM05D002709 ORTHO05D002914 7.2e-07 60.1 202 29.2
Gorai.012G081100 Gossypium raimondii HOM05D002709 ORTHO05D002914 7.2e-07 60.1 227 25.6
CDE01G0783 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 9.4e-07 59.7 133 35.3
Glyma.16G090900 Glycine max HOM05D002709 ORTHO05D002914 9.4e-07 59.7 182 28.0
ECA234G2181 Erigeron canadensis HOM05D002709 ORTHO05D002914 1.2e-06 59.3 204 26.5
Lsat_1_v5_gn_4_40321 Lactuca sativa HOM05D002709 ORTHO05D002914 1.2e-06 59.3 203 26.6
Os01g0577300 Oryza sativa ssp. japonica HOM05D001604 ORTHO05D001432 1.2e-06 59.3 180 28.3
THA.LOC104800872 Tarenaya hassleriana HOM05D002709 ORTHO05D002914 1.2e-06 59.3 185 28.6
CSS0031913 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 1.6e-06 58.9 169 29.6
Sed0026777 Sechium edule HOM05D002709 ORTHO05D002914 2.1e-06 58.5 202 24.8
VMungo0251G2843 Vigna mungo HOM05D002709 ORTHO05D002914 2.1e-06 58.5 187 26.2
BcaC02g11211 Brassica carinata HOM05D002709 ORTHO05D002914 2.7e-06 58.2 195 28.2
C04p19170 Brassica napus HOM05D002709 ORTHO05D002914 2.7e-06 58.2 195 28.2
BolC4t23450H Brassica oleracea HOM05D002709 ORTHO05D002914 2.7e-06 58.2 195 28.2
Lj4g0027774 Lotus japonicus HOM05D002709 ORTHO05D002914 2.7e-06 58.2 180 27.8
PSO478G0748 Papaver somniferum HOM05D002709 ORTHO05D002914 2.7e-06 58.2 203 25.6
BraA05t20369Z Brassica rapa HOM05D002709 ORTHO05D002914 4.7e-06 57.4 195 28.2
Eucgr.E04247 Eucalyptus grandis HOM05D002709 ORTHO05D002914 4.7e-06 57.4 176 30.1
Phvul.003G281300 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 4.7e-06 57.4 187 26.2
A05p14410 Brassica napus HOM05D002709 ORTHO05D002914 6.1e-06 57.0 197 27.4
BraA04t17924Z Brassica rapa HOM05D002709 ORTHO05D002914 6.1e-06 57.0 199 28.6
CiPaw.13G149600 Carya illinoinensis HOM05D002709 ORTHO05D002914 6.1e-06 57.0 192 26.6
Sp4g13700 Schrenkiella parvula HOM05D002709 ORTHO05D002914 6.1e-06 57.0 197 27.4
Nitab4.5_0000050g0090 Nicotiana tabacum HOM05D002709 ORTHO05D002914 8.0e-06 56.6 159 30.8


User provided reference genes

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