Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 0.0e+00 1253.0 666 100.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.3e-96 357.5 681 37.2
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 6.7e-88 329.3 682 35.6
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 3.2e-82 310.5 651 35.0
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.1e-81 307.8 666 34.5
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.1e-81 306.2 671 33.8
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.4e-80 305.1 660 33.2
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.1e-80 303.1 649 34.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 5.1e-80 303.1 664 33.4
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.7e-80 302.8 645 33.5
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 6.7e-80 302.8 658 34.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.5e-79 301.6 654 34.4
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.5e-79 301.6 669 32.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.5e-79 301.6 664 33.6
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.6e-79 300.8 647 34.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.3e-79 300.4 670 33.4
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.7e-79 299.7 662 33.4
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.4e-79 299.3 672 33.3
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.4e-79 299.3 683 34.1
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 7.4e-79 299.3 646 34.2
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 9.7e-79 298.9 646 33.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.7e-79 298.9 672 33.0
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.8e-78 297.4 671 34.0
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.7e-78 297.0 654 32.7
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 4.8e-78 296.6 672 33.0
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 4.8e-78 296.6 652 34.4
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.8e-78 296.6 642 33.3
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 6.3e-78 296.2 670 34.5
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-77 295.0 660 32.7
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-77 295.0 660 32.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-77 295.0 672 32.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.0e-77 292.7 657 32.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 9.1e-77 292.4 643 32.8
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.1e-77 292.4 671 32.3
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.1e-77 292.4 671 32.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 9.1e-77 292.4 667 34.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.2e-76 292.0 664 32.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-76 291.2 665 34.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.0e-76 291.2 679 32.0
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-75 288.5 667 33.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.7e-75 288.1 634 32.8
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.7e-75 288.1 646 33.0
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.2e-75 287.7 665 33.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-75 287.3 636 32.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.9e-75 287.3 670 32.2
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.9e-75 287.3 683 32.7
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.8e-75 287.0 636 32.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 3.8e-75 287.0 680 33.5
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.0e-75 286.6 678 33.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.0e-75 286.6 671 32.3
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 6.5e-75 286.2 636 32.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 8.5e-75 285.8 673 31.9
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 8.5e-75 285.8 679 33.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.5e-74 284.3 655 33.0
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.5e-74 284.3 646 33.3
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 5.5e-74 283.1 636 32.1
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 7.2e-74 282.7 637 31.6
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.2e-74 282.7 642 33.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.6e-73 281.6 645 33.8
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.1e-73 281.2 662 32.5
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 3.6e-73 280.4 649 31.4
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.7e-73 280.0 670 33.3
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.7e-73 280.0 668 33.4
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.1e-73 279.6 685 32.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.0e-72 278.9 669 31.4
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.4e-72 278.5 680 33.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.8e-72 278.1 641 32.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.7e-72 276.2 654 31.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.8e-72 275.8 671 31.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.0e-71 274.6 656 32.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.0e-71 274.6 688 32.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.0e-71 274.6 655 31.8
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.3e-71 273.9 677 32.6
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.7e-70 271.6 650 33.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.7e-70 270.4 661 32.8
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 4.8e-70 270.0 656 31.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 6.3e-70 269.6 670 31.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.3e-69 266.5 616 33.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 5.3e-69 266.5 667 32.4
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.2e-68 265.4 646 31.9
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.5e-68 263.5 645 31.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 7.7e-68 262.7 646 30.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 7.7e-68 262.7 648 30.9
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 7.7e-68 262.7 648 30.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.0e-67 262.3 652 31.4
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.0e-67 262.3 679 32.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.8e-67 260.4 645 31.0
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 5.0e-67 260.0 652 31.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 6.5e-67 259.6 672 31.4
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 8.5e-67 259.2 647 31.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 8.5e-67 259.2 643 31.1
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.5e-66 257.7 655 33.3
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-65 255.0 668 31.7
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 8.0e-65 252.7 674 31.5
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.3e-64 251.1 666 32.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 8.8e-64 249.2 649 29.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 8.8e-64 249.2 663 30.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.7e-62 245.0 601 31.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.1e-61 240.7 657 30.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.3e-61 240.0 668 29.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-59 235.3 657 30.9
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.5e-59 232.6 407 37.6
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.9e-58 231.5 637 31.4
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 5.2e-56 223.4 583 32.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.4e-53 215.3 649 28.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.4e-53 215.3 523 34.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.0e-53 213.0 384 35.2
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.2e-52 212.2 399 36.3
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.7e-52 211.1 384 34.9
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.3e-51 208.8 626 30.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 7.2e-50 203.0 392 35.2
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 9.5e-50 202.6 484 32.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.3e-48 198.0 646 28.6
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-47 195.3 654 29.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-44 185.3 352 34.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-42 179.1 633 27.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.5e-42 178.7 640 28.8
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-42 177.9 642 27.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-42 176.8 645 28.5
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 7.3e-42 176.4 635 27.9
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.8e-41 174.5 333 35.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 5.8e-39 166.8 645 26.8
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 8.0e-33 146.4 646 26.8
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.6e-28 130.6 653 22.5
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 7.8e-28 129.8 414 28.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.0e-27 129.4 414 28.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.3e-26 124.0 634 24.4
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.5e-23 115.5 203 36.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-21 108.6 661 24.2
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.9e-21 108.6 362 26.5
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 6.0e-20 103.6 634 22.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.3e-18 97.8 633 23.5
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.3e-18 97.4 181 32.0
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-17 95.9 465 23.9
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-17 94.4 152 38.8
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.4e-16 92.4 170 33.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-16 92.0 179 34.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-14 85.5 633 22.6
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 4.2e-13 80.9 100 42.0
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-12 79.0 461 23.0
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.1e-11 73.9 112 33.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.6e-11 73.6 127 33.1
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-10 72.4 86 41.9
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-10 70.9 322 23.9
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 3.6e-09 67.8 92 37.0
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 3.6e-09 67.8 144 31.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-07 62.0 141 32.6
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.3e-06 59.3 132 34.1
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-06 58.9 68 42.6
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-06 58.5 68 42.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.2e-06 58.5 74 35.1
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-06 58.2 68 44.1


User provided reference genes

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