Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 4196.4 2139 100.0
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1491.1 2186 43.3
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1252.3 2196 37.9
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1239.9 2131 38.2
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1233.8 2192 37.8
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1218.8 2170 37.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1216.8 2189 38.1
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1211.8 2181 37.7
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1207.6 2185 38.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1206.8 2170 37.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1206.4 2190 37.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1197.6 2172 37.4
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1194.5 2205 37.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1190.6 2173 37.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1181.8 2174 37.3
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1178.3 2274 36.1
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1172.1 2175 36.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1170.2 2201 36.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1167.5 2165 36.7
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1166.0 2174 37.3
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1164.8 2220 36.8
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1164.1 2150 36.7
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1162.5 2194 36.6
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1159.1 2209 36.0
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1155.6 2213 36.4
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1155.2 2193 36.3
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1149.8 2187 36.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1149.8 2199 35.7
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1149.4 2144 36.9
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1149.4 2170 37.0
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1148.7 2182 36.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1147.5 2192 36.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1146.7 2199 36.9
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1146.3 2173 36.7
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1145.2 2172 36.4
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1144.8 2156 36.5
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1144.8 2149 36.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1143.6 2180 36.3
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1143.6 2201 36.4
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1142.1 2164 36.2
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1142.1 2181 35.5
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1140.9 2189 35.5
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1139.0 2179 36.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1137.9 2152 36.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1136.3 2200 36.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1135.6 2217 36.3
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1129.8 2153 36.5
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1128.6 2176 36.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1128.2 2191 36.5
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1127.9 2191 36.1
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1127.5 2199 36.0
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1127.1 2171 36.2
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1124.4 2186 36.2
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1120.9 2141 35.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1120.9 2203 36.2
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1116.7 2167 34.9
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1114.0 2150 35.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1112.4 2181 35.7
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1110.5 2112 36.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1109.0 2186 36.0
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1108.6 2176 34.8
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1106.7 2179 35.4
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1100.1 2195 35.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1098.2 2190 35.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1094.3 2219 35.6
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1092.0 2147 35.6
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1092.0 2177 35.6
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1084.3 2195 34.6
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 1.0e-310 1071.2 2166 34.9
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 1.0e-310 1071.2 2151 34.6
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 8.5e-310 1068.1 2211 34.8
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 8.5e-310 1068.1 2202 34.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 2.5e-309 1066.6 2268 33.6
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 6.1e-308 1062.0 2157 35.0
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 1.3e-305 1054.3 2329 34.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 1.7e-305 1053.9 2195 34.4
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 4.8e-305 1052.4 2043 35.6
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 6.3e-305 1052.0 2150 34.8
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 6.3e-305 1052.0 2169 34.3
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 6.3e-305 1052.0 2186 35.5
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 2.4e-304 1050.0 2049 35.9
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 3.4e-303 1046.2 2148 34.4
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 4.5e-295 1019.2 2168 34.9
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 2.0e-279 967.2 2165 33.9
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.9e-277 960.7 2154 33.4
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 5.9e-271 939.1 1984 34.3
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 6.2e-252 875.9 1988 33.6
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 1.7e-249 867.8 1712 35.3
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.0e-246 858.6 1794 33.9
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 2.7e-239 833.9 2180 31.9
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.3e-221 773.5 1166 40.6
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 7.1e-216 756.1 2145 29.7
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 4.1e-203 713.8 1565 34.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.2e-172 609.8 811 44.3
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.4e-157 560.8 717 44.9
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.1e-147 529.6 858 38.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.3e-132 476.9 766 39.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.3e-129 468.8 1237 30.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 1.3e-119 436.4 810 36.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 9.6e-112 410.2 771 35.7
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.6e-85 322.4 1595 24.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 7.7e-61 241.1 984 27.2
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.8e-57 227.6 387 35.9
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.5e-56 226.9 382 37.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.4e-46 193.7 281 40.2
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-44 186.8 239 43.1
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.8e-40 171.0 209 42.1
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 4.3e-35 155.6 262 37.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.9e-30 140.2 283 31.4
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 8.9e-25 121.3 130 48.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.8e-24 117.9 303 31.4
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.7e-23 115.9 199 34.7
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.9e-23 115.5 240 31.2
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.6e-21 110.5 501 25.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.4e-17 97.4 166 38.0
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 5.2e-17 95.5 105 44.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.6e-16 91.7 118 44.1
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 6.0e-13 82.0 68 57.4
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 8.6e-12 78.2 318 26.4
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 6.8e-09 68.6 111 40.5
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.9e-07 63.2 105 40.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 3.8e-07 62.8 87 47.1


User provided reference genes

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