Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 0.0e+00 1471.8 744 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.7e-196 689.1 664 57.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.0e-190 669.1 718 53.1
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.4e-187 660.6 712 51.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-185 653.3 708 51.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.0e-185 652.1 706 50.4
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.6e-185 651.7 746 49.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.3e-184 649.4 713 51.9
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.3e-184 649.0 693 51.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 7.3e-184 648.3 705 51.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-182 643.3 707 49.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.0e-182 642.5 709 49.9
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 5.2e-182 642.1 713 50.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.6e-181 639.8 705 49.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.4e-181 639.4 709 49.6
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.7e-180 637.1 705 49.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.1e-179 632.5 695 50.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 3.5e-178 629.4 708 48.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 4.6e-178 629.0 711 49.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 4.6e-178 629.0 710 48.9
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.0e-178 628.6 713 49.6
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.0e-177 627.9 707 48.7
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.7e-177 627.1 737 48.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.3e-177 626.7 707 49.4
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.3e-177 626.7 707 48.9
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 5.1e-177 625.5 709 48.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.1e-176 624.4 707 48.2
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.5e-176 623.2 709 48.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 7.3e-176 621.7 706 48.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 7.3e-176 621.7 709 48.9
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.6e-175 620.5 746 48.0
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.1e-175 620.2 709 48.5
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.7e-175 619.0 707 48.4
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.2e-175 618.6 714 48.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 8.1e-175 618.2 707 48.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.1e-174 617.8 740 47.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.1e-174 617.8 707 48.4
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-174 617.1 711 48.4
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.8e-174 617.1 708 48.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 5.2e-174 615.5 735 47.6
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.5e-173 614.0 708 48.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.6e-173 613.2 746 47.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 7.6e-173 611.7 706 48.9
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 7.6e-173 611.7 708 48.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 9.9e-173 611.3 707 47.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.3e-172 610.9 708 48.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.7e-172 610.5 713 47.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.7e-172 610.5 712 48.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.9e-172 609.8 744 46.8
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.9e-172 609.8 726 48.1
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 3.7e-172 609.4 705 48.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 4.9e-172 609.0 707 48.5
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 4.9e-172 609.0 787 45.1
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.4e-171 607.4 739 47.2
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-171 607.4 710 47.2
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.4e-171 607.4 744 47.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.9e-171 607.1 707 47.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.4e-171 606.7 741 47.0
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.4e-171 606.7 708 47.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.4e-171 606.7 738 46.7
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 3.2e-171 606.3 739 47.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 4.1e-171 605.9 705 47.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.1e-171 605.9 743 46.8
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-170 604.4 710 48.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.2e-170 604.4 719 47.3
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.1e-170 603.6 706 48.2
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.7e-170 603.2 737 46.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.7e-170 603.2 712 48.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 3.0e-169 599.7 695 48.2
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 3.0e-169 599.7 696 48.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 8.6e-169 598.2 738 46.9
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.3e-168 596.3 758 45.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 3.3e-168 596.3 709 48.0
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 5.6e-168 595.5 739 46.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 7.3e-168 595.1 711 48.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.2e-167 594.3 708 46.9
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 6.2e-167 592.0 688 48.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.2e-167 592.0 706 46.9
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.0e-166 589.3 708 46.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.4e-165 586.3 708 46.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.7e-164 583.9 716 46.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.1e-163 578.6 664 49.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.6e-162 577.4 737 45.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 3.5e-162 576.2 707 45.8
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.6e-162 575.9 708 46.2
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.8e-162 575.1 735 44.8
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.7e-161 573.9 725 46.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.7e-161 573.9 710 46.6
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 5.1e-161 572.4 706 45.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.1e-160 571.2 691 45.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.5e-160 570.1 728 45.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.8e-159 566.6 705 45.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 4.8e-159 565.8 705 46.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 6.2e-159 565.5 728 45.5
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 8.1e-159 565.1 734 45.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.8e-157 558.9 697 45.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 9.9e-157 558.1 684 47.1
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.3e-156 557.8 711 46.1
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.2e-156 557.0 714 45.7
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 3.8e-156 556.2 711 45.9
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 4.9e-156 555.8 698 45.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 6.4e-156 555.4 710 45.6
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.2e-155 553.1 651 48.5
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.5e-154 549.7 720 43.9
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 6.0e-154 548.9 710 44.9
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.1e-153 545.8 642 47.5
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 8.7e-153 545.0 741 44.0
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.0e-150 535.0 707 44.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 7.6e-149 531.9 728 43.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.9e-148 530.0 709 42.7
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.4e-147 525.8 708 43.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-146 524.2 714 44.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 6.0e-146 522.3 555 51.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-145 521.2 704 44.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.8e-145 520.8 713 43.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.5e-144 516.9 650 46.0
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 9.6e-144 515.0 874 39.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.3e-143 514.6 708 43.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.5e-136 490.3 656 44.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.8e-135 486.1 555 49.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 8.2e-135 485.3 705 40.9
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.4e-133 479.9 628 46.0
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.4e-133 479.9 711 41.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.6e-133 478.8 594 48.0
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.8e-129 467.6 708 40.4
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-129 466.8 584 46.4
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.4e-125 453.4 537 47.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 7.7e-125 452.2 735 39.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.0e-124 451.8 497 50.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 3.2e-123 446.8 708 40.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.4e-118 430.6 342 64.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 5.5e-115 419.5 703 38.3
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.7e-85 319.3 599 37.7
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-77 294.3 258 58.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-76 290.8 254 58.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 8.3e-71 272.7 434 40.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-41 176.0 182 49.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.9e-35 155.2 190 45.3
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.5e-35 154.8 122 63.1
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-33 149.4 140 55.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.0e-32 145.2 343 31.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 3.4e-32 144.4 318 32.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.5e-23 113.6 113 49.6
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 7.9e-21 106.7 280 27.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.8e-17 95.5 175 36.6
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 9.0e-17 93.2 223 34.1
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 5.0e-15 87.4 65 70.8
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 4.3e-11 74.3 112 35.7
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 4.3e-11 74.3 112 35.7
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-10 72.8 192 30.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 9.1e-09 66.6 118 36.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.7e-08 63.5 43 67.4
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.7e-07 62.4 37 75.7
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.8e-07 61.2 123 33.3


User provided reference genes

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