Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.1e-172 609.8 289 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 2.5e-79 299.7 277 50.5
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.4e-69 267.3 279 44.8
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 5.7e-68 261.9 281 43.8
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 3.7e-67 259.2 275 46.5
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.4e-66 256.5 249 49.8
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.5e-65 252.7 270 45.6
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 3.8e-64 249.2 277 44.4
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 5.0e-64 248.8 275 42.9
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.1e-63 247.7 276 45.3
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.1e-63 247.7 270 44.4
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.5e-63 247.3 276 43.5
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.9e-63 246.9 282 42.2
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.9e-63 246.9 276 46.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 2.5e-63 246.5 277 45.5
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 2.5e-63 246.5 276 42.8
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 3.2e-63 246.1 281 42.3
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 3.2e-63 246.1 229 48.9
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 7.2e-63 245.0 280 44.6
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 9.4e-63 244.6 289 41.9
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.2e-62 244.2 276 42.8
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.6e-62 243.8 267 44.6
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.6e-62 243.8 247 47.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.6e-62 243.8 279 43.7
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.6e-62 243.8 279 43.4
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.7e-62 243.0 281 42.0
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.6e-62 242.7 283 41.3
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.7e-62 242.3 289 41.2
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 6.1e-62 241.9 280 42.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.1e-62 241.9 276 42.8
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 6.1e-62 241.9 267 44.6
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 2.3e-61 240.0 289 40.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 3.0e-61 239.6 286 41.6
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 3.0e-61 239.6 287 41.1
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 4.0e-61 239.2 278 41.7
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 6.8e-61 238.4 276 41.7
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 6.8e-61 238.4 280 41.8
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 6.8e-61 238.4 283 41.7
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 2.6e-60 236.5 273 41.8
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 4.4e-60 235.7 267 44.2
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 7.5e-60 235.0 276 42.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 7.5e-60 235.0 276 43.5
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.7e-59 233.8 276 41.7
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 8.3e-59 231.5 277 41.2
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 3.1e-58 229.6 286 41.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 5.3e-58 228.8 274 39.4
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 7.0e-58 228.4 289 41.2
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.2e-57 227.6 276 40.9
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.0e-57 226.9 279 40.9
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.3e-56 224.2 275 41.5
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.7e-56 223.8 276 40.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.9e-56 223.0 236 46.6
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 1.1e-55 221.1 276 40.2
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.5e-55 220.7 284 40.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.5e-55 220.7 278 40.3
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 5.5e-55 218.8 268 41.4
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 7.2e-55 218.4 272 40.8
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 7.2e-55 218.4 283 38.9
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.6e-54 217.2 272 40.8
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.6e-54 217.2 272 40.8
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.6e-54 217.2 276 39.1
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 2.1e-54 216.9 295 39.7
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 6.1e-54 215.3 252 41.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.3e-53 213.4 238 42.9
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 8.8e-53 211.5 228 45.2
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.6e-52 209.9 296 38.2
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.6e-52 209.9 276 38.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 4.1e-50 202.6 287 37.3
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.7e-49 199.9 280 36.1
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 3.5e-49 199.5 277 38.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 4.5e-49 199.1 276 37.7
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 4.5e-49 199.1 276 37.7
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.0e-48 198.0 276 37.3
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.3e-48 196.8 288 36.8
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.9e-47 193.7 276 38.8
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.5e-47 193.4 229 42.4
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 4.2e-47 192.6 183 47.5
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 7.2e-47 191.8 277 36.5
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 3.0e-45 186.4 308 34.4
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 6.8e-45 185.3 233 40.3
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 2.2e-43 180.3 320 36.9
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 2.4e-42 176.8 329 33.7
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.5e-41 172.9 195 45.6
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.2e-38 164.5 164 44.5
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 8.0e-38 161.8 179 43.0
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 3.1e-37 159.8 131 51.1
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.2e-36 157.9 186 40.9
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 3.4e-36 156.4 171 43.9
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 6.2e-30 135.6 122 47.5
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.5e-28 131.0 188 36.2
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.3e-27 127.9 119 47.1
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.9e-27 126.7 188 35.6
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 6.4e-27 125.6 247 35.2
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.2e-25 121.3 141 42.6
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 8.6e-24 115.2 277 27.8
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.6e-20 102.1 146 34.9
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 2.4e-18 97.1 147 32.0
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.7e-16 90.9 83 50.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.1e-10 71.6 230 25.7
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 3.2e-10 70.1 231 26.4
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 4.2e-10 69.7 75 41.3
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 5.4e-10 69.3 233 25.3
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 5.4e-10 69.3 214 26.2
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.5e-09 66.6 232 24.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 6.0e-09 65.9 217 27.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 6.0e-09 65.9 249 24.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 7.8e-09 65.5 225 27.1
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.0e-08 65.1 242 25.2
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.0e-08 65.1 236 24.6
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.3e-08 64.7 237 24.5
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.7e-08 64.3 194 25.3
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.9e-08 63.2 222 27.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 5.1e-08 62.8 214 27.1
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.1e-08 62.8 230 25.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 5.1e-08 62.8 234 22.6
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.1e-08 62.8 237 24.9
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 6.6e-08 62.4 168 25.0
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 6.6e-08 62.4 228 24.6
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.7e-08 62.0 232 25.0
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 8.7e-08 62.0 232 22.4
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.5e-07 61.2 223 26.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.5e-07 61.2 167 29.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.5e-07 60.5 170 28.8
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 4.3e-07 59.7 233 22.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 5.6e-07 59.3 221 27.1
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 5.6e-07 59.3 228 24.6
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 7.3e-07 58.9 199 26.1
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 7.3e-07 58.9 168 26.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 7.3e-07 58.9 162 27.2
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.6e-07 58.5 170 28.2
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.8e-06 57.0 208 26.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.6e-06 56.6 167 25.1
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.8e-06 56.2 170 27.1
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 4.8e-06 56.2 237 23.6
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 6.2e-06 55.8 231 23.8
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 8.1e-06 55.5 156 25.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 8.1e-06 55.5 156 25.6


User provided reference genes

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