Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.4e-70 269.6 150 100.0
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 7.6e-24 114.4 104 58.7
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 4.2e-22 108.6 110 62.7
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 5.5e-22 108.2 109 57.8
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.7e-21 105.9 123 51.2
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 4.6e-21 105.1 109 60.6
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 6.0e-21 104.8 154 50.6
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 7.9e-21 104.4 99 57.6
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 7.9e-21 104.4 154 50.0
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 7.9e-21 104.4 133 55.6
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.0e-20 104.0 143 55.9
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.0e-20 104.0 114 59.6
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.3e-20 103.6 130 56.2
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 1.3e-20 103.6 110 60.0
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.8e-20 103.2 143 55.9
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 3.9e-20 102.1 113 62.8
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 5.1e-20 101.7 98 67.3
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.1e-20 101.7 143 55.2
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 6.7e-20 101.3 100 64.0
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 6.7e-20 101.3 78 60.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 6.7e-20 101.3 100 64.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 8.7e-20 100.9 127 56.7
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 1.1e-19 100.5 103 61.2
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.1e-19 100.5 94 54.3
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.9e-19 99.8 109 48.6
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.9e-19 99.8 87 52.9
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 2.5e-19 99.4 95 58.9
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 2.5e-19 99.4 133 43.6
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 2.5e-19 99.4 132 53.8
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.5e-19 99.4 103 63.1
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 2.5e-19 99.4 78 59.0
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 4.3e-19 98.6 112 59.8
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 5.7e-19 98.2 99 64.6
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 5.7e-19 98.2 82 57.3
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 7.4e-19 97.8 88 54.5
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 7.4e-19 97.8 135 52.6
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 9.7e-19 97.4 131 49.6
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 9.7e-19 97.4 147 44.2
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 9.7e-19 97.4 147 43.5
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.3e-18 97.1 113 57.5
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.3e-18 97.1 87 51.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.6e-18 96.7 78 57.7
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.6e-18 96.7 130 52.3
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.6e-18 96.7 85 55.3
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.6e-18 96.7 118 59.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.6e-18 96.7 122 45.9
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 2.2e-18 96.3 96 64.6
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.2e-18 96.3 128 51.6
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 2.2e-18 96.3 106 62.3
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.8e-18 95.9 78 56.4
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 2.8e-18 95.9 89 56.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.8e-18 95.9 99 62.6
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 2.8e-18 95.9 78 57.7
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.8e-18 95.9 115 56.5
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 3.7e-18 95.5 105 47.6
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 3.7e-18 95.5 78 57.7
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.8e-18 95.1 78 59.0
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.8e-18 95.1 78 59.0
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 4.8e-18 95.1 78 56.4
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 4.8e-18 95.1 99 54.5
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 4.8e-18 95.1 78 56.4
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.3e-18 94.7 78 59.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 6.3e-18 94.7 94 66.0
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.1e-17 94.0 99 61.6
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 1.1e-17 94.0 111 56.8
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.1e-17 94.0 78 55.1
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.1e-17 94.0 94 53.2
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.1e-17 94.0 109 44.0
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.1e-17 94.0 86 53.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.4e-17 93.6 106 60.4
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.4e-17 93.6 84 54.8
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.8e-17 93.2 93 51.6
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 1.8e-17 93.2 99 60.6
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.8e-17 93.2 113 43.4
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.4e-17 92.8 113 57.5
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.4e-17 92.8 84 53.6
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.4e-17 92.8 127 52.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 3.1e-17 92.4 124 41.1
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.1e-17 92.4 78 53.8
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 3.1e-17 92.4 127 44.9
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.1e-17 92.0 78 53.8
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 4.1e-17 92.0 87 52.9
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.1e-17 92.0 72 58.3
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 4.1e-17 92.0 77 54.5
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 5.3e-17 91.7 131 38.9
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 6.9e-17 91.3 124 52.4
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 6.9e-17 91.3 98 57.1
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.0e-16 89.7 71 57.7
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.6e-16 89.4 131 48.9
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 2.6e-16 89.4 73 58.9
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 3.4e-16 89.0 84 52.4
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 7.6e-16 87.8 109 45.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 7.6e-16 87.8 98 44.9
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.0e-15 87.4 84 51.2
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 1.7e-15 86.7 78 50.0
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.7e-15 86.7 139 47.5
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 1.7e-15 86.7 99 56.6
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.2e-15 86.3 78 52.6
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 2.2e-15 86.3 78 48.7
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 2.2e-15 86.3 78 48.7
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 2.2e-15 86.3 78 48.7
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 2.2e-15 86.3 78 48.7
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 2.9e-15 85.9 69 56.5
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 3.8e-15 85.5 108 54.6
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 6.5e-15 84.7 62 62.9
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 8.5e-15 84.3 99 44.4
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 8.5e-15 84.3 99 44.4
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.4e-14 83.6 76 56.6
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 2.5e-14 82.8 62 61.3
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 3.2e-14 82.4 62 62.9
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 5.5e-14 81.6 80 46.2
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.2e-13 80.5 65 55.4
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 1.6e-13 80.1 100 49.0
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 2.1e-13 79.7 106 46.2
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.6e-13 79.0 102 38.2
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.4e-12 77.0 110 51.8
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-11 73.9 77 46.8
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-11 73.9 77 46.8
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 2.8e-10 69.3 100 40.0
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-10 68.9 62 75.8
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-10 68.9 62 75.8
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.2e-10 67.8 62 62.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.1e-09 67.4 75 46.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 5.0e-07 58.5 65 58.5
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 5.0e-07 58.5 51 54.9
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.1e-06 57.4 53 52.8
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.9e-06 56.6 100 35.0
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.9e-06 56.6 36 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2739 Anthoceros agrestis HOM05D005516 ORTHO05D006713 2.5e-06 56.2 58 50.0
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.5e-06 55.1 97 37.1


User provided reference genes

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