Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 1.4e-63 246.1 123 100.0
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.0e-42 175.3 119 71.4
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.0e-42 175.3 119 71.4
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 5.1e-42 174.5 123 67.5
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 2.6e-38 162.2 123 61.8
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 3.7e-32 141.7 123 59.3
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 3.7e-32 141.7 123 59.3
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 3.7e-32 141.7 123 59.3
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 6.2e-32 141.0 123 59.3
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 6.2e-32 141.0 123 58.5
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 8.2e-32 140.6 122 58.2
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.1e-31 140.2 123 58.5
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.1e-31 140.2 123 58.5
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 1.1e-31 140.2 123 58.5
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.8e-31 139.4 122 58.2
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 2.4e-31 139.0 123 57.7
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.1e-31 138.7 123 58.5
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 3.1e-31 138.7 123 56.9
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 3.1e-31 138.7 122 57.4
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 4.0e-31 138.3 123 58.5
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 5.3e-31 137.9 123 56.9
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 5.3e-31 137.9 123 57.7
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 6.9e-31 137.5 123 56.9
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 6.9e-31 137.5 123 56.1
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 9.0e-31 137.1 122 57.4
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 9.0e-31 137.1 123 56.1
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 9.0e-31 137.1 123 56.1
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 9.0e-31 137.1 123 57.7
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 1.2e-30 136.7 122 58.2
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 1.2e-30 136.7 122 58.2
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 1.2e-30 136.7 122 58.2
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 1.2e-30 136.7 123 56.9
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 1.2e-30 136.7 123 56.1
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 1.5e-30 136.3 123 56.9
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 1.5e-30 136.3 123 56.1
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 2.0e-30 136.0 123 57.7
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.6e-30 135.6 123 55.3
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 2.6e-30 135.6 123 55.3
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.6e-30 135.6 122 55.7
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 3.4e-30 135.2 123 56.1
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 3.4e-30 135.2 123 55.3
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.4e-30 135.2 111 60.4
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 3.4e-30 135.2 123 55.3
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 4.5e-30 134.8 124 58.1
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 4.5e-30 134.8 123 55.3
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.5e-30 134.8 123 56.9
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.5e-30 134.8 123 56.9
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 4.5e-30 134.8 123 56.9
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 4.5e-30 134.8 123 55.3
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 5.8e-30 134.4 124 56.5
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 5.8e-30 134.4 123 54.5
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 7.6e-30 134.0 124 56.5
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 7.6e-30 134.0 124 56.5
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 7.6e-30 134.0 123 54.5
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.0e-29 133.7 123 56.1
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 1.0e-29 133.7 123 55.3
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 55.3
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 54.5
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 55.3
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 56.1
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 55.3
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 56.1
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 1.3e-29 133.3 122 57.4
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 55.3
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.7e-29 132.9 123 54.5
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 2.2e-29 132.5 123 55.3
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 2.2e-29 132.5 123 53.7
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 2.2e-29 132.5 111 58.6
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 54.5
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 54.5
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 54.5
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 54.5
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 54.5
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 2.9e-29 132.1 123 55.3
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 2.9e-29 132.1 119 56.3
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 3.8e-29 131.7 123 56.1
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 4.9e-29 131.3 123 54.5
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 4.9e-29 131.3 123 54.5
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 6.5e-29 131.0 123 54.5
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 8.4e-29 130.6 123 53.7
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 8.4e-29 130.6 123 52.0
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 8.4e-29 130.6 123 54.5
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 1.1e-28 130.2 124 56.5
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 1.4e-28 129.8 123 53.7
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.4e-28 129.8 124 54.8
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 1.4e-28 129.8 123 52.8
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 1.4e-28 129.8 123 53.7
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 1.9e-28 129.4 123 52.8
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 2.5e-28 129.0 123 55.3
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 3.2e-28 128.6 123 55.3
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 4.2e-28 128.3 124 54.8
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 7.1e-28 127.5 123 54.5
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 1.2e-27 126.7 112 56.2
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 1.2e-27 126.7 123 50.4
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.2e-27 126.7 112 58.0
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 1.6e-27 126.3 124 54.0
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 2.1e-27 125.9 123 52.0
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 2.7e-27 125.6 123 52.0
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 2.7e-27 125.6 123 52.0
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 2.7e-27 125.6 124 54.8
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 2.7e-27 125.6 123 52.0
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.5e-27 125.2 139 49.6
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.5e-27 125.2 124 54.0
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 3.5e-27 125.2 123 50.4
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 6.0e-27 124.4 123 51.2
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 7.9e-27 124.0 123 55.3
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 1.3e-26 123.2 114 57.0
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 2.3e-26 122.5 123 52.0
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 3.0e-26 122.1 123 53.7
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 3.9e-26 121.7 124 54.8
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 3.9e-26 121.7 124 54.8
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 5.1e-26 121.3 124 54.0
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 5.1e-26 121.3 121 54.5
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 6.7e-26 120.9 123 56.1
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 8.7e-26 120.6 124 53.2
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 8.7e-26 120.6 122 52.5
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.1e-25 120.2 99 61.6
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 1.1e-25 120.2 121 52.9
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 1.1e-25 120.2 98 59.2
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 1.1e-25 120.2 113 54.9
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.1e-25 120.2 114 56.1
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 1.5e-25 119.8 97 60.8
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 1.5e-25 119.8 122 51.6
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.5e-25 119.8 124 53.2
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 1.9e-25 119.4 102 58.8
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 1.9e-25 119.4 124 53.2
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 1.9e-25 119.4 122 51.6
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.5e-25 119.0 127 51.2
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 2.5e-25 119.0 102 56.9
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 3.3e-25 118.6 122 53.3
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 3.3e-25 118.6 98 59.2
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 4.3e-25 118.2 114 55.3
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 5.7e-25 117.9 114 53.5
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 5.7e-25 117.9 124 51.6
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 5.7e-25 117.9 114 53.5
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 5.7e-25 117.9 114 55.3
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 5.7e-25 117.9 116 54.3
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 7.4e-25 117.5 98 58.2
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 7.4e-25 117.5 122 51.6
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 9.7e-25 117.1 114 53.5
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 9.7e-25 117.1 122 50.8
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 1.3e-24 116.7 101 57.4
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.3e-24 116.7 98 57.1
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 1.3e-24 116.7 98 58.2
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 1.3e-24 116.7 127 51.2
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 2.2e-24 115.9 144 47.2
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 3.7e-24 115.2 119 47.1
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 3.7e-24 115.2 124 53.2
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 4.8e-24 114.8 97 56.7
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 1.1e-23 113.6 114 52.6
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.4e-23 113.2 97 54.6
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 3.1e-23 112.1 158 39.9
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 2.0e-22 109.4 111 52.3
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 3.4e-22 108.6 97 55.7
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 4.5e-22 108.2 96 55.2
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 7.6e-22 107.5 139 44.6
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.8
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 2.2e-21 105.9 94 58.5
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 6.5e-21 104.4 75 66.7
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 8.5e-21 104.0 91 56.0
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 3.2e-20 102.1 85 61.2
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 7.2e-20 100.9 123 46.3
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 2.1e-19 99.4 124 46.8
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 2.7e-19 99.0 85 51.8
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 6.1e-19 97.8 90 54.4
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 7.9e-19 97.4 84 56.0
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 3.0e-18 95.5 196 34.7
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.9e-17 92.8 91 50.5
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 4.3e-17 91.7 83 54.2
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 7.4e-17 90.9 105 47.6
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.8e-16 89.0 85 54.1
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.8e-16 89.0 85 54.1
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 4.8e-16 88.2 73 58.9
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 4.8e-16 88.2 85 52.9
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.6e-14 82.4 86 52.3
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 1.3e-13 80.1 82 53.7
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 1.1e-12 77.0 80 52.5
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.9e-12 76.3 71 52.1
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 2.0e-09 66.2 61 54.1
AUR62030679 Chenopodium quinoa HOM05D003627 ORTHO05D004307 2.6e-06 55.8 83 41.0


User provided reference genes

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