Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 6.5e-260 900.2 457 100.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 7.9e-157 557.8 387 70.3
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.8e-154 548.5 393 67.4
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.4e-153 546.2 413 66.3
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 9.1e-153 544.3 367 70.0
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.1e-150 537.3 380 69.5
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.5e-150 536.2 410 63.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.5e-150 536.2 380 69.5
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 4.2e-150 535.4 383 69.2
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.5e-150 535.0 381 69.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 9.4e-150 534.3 379 69.9
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.6e-149 533.5 389 67.4
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.7e-149 532.7 409 66.7
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.6e-149 532.3 373 70.0
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 3.6e-149 532.3 388 67.3
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.6e-149 532.3 362 71.5
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.7e-149 531.9 373 71.0
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 6.1e-149 531.6 384 68.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 8.0e-149 531.2 373 69.7
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 8.0e-149 531.2 393 66.4
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.0e-148 530.8 378 69.3
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.4e-148 530.4 433 61.9
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.4e-148 530.4 409 66.5
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 3.0e-148 529.3 373 70.2
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.0e-148 529.3 393 66.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 4.0e-148 528.9 435 62.8
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 4.0e-148 528.9 407 64.4
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 4.0e-148 528.9 377 68.7
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.2e-148 528.5 384 67.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 6.7e-148 528.1 380 68.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 6.7e-148 528.1 383 67.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 8.8e-148 527.7 395 66.3
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.8e-148 527.7 395 66.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.8e-148 527.7 395 66.3
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 8.8e-148 527.7 378 67.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 8.8e-148 527.7 439 61.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.2e-147 527.3 385 67.8
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.2e-147 527.3 385 67.8
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.2e-147 527.3 378 68.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.5e-147 526.9 383 68.1
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.0e-147 526.6 378 68.0
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.0e-147 526.6 383 67.6
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.0e-147 526.6 413 65.4
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-147 526.6 381 67.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.0e-147 526.6 382 67.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.6e-147 526.2 385 68.6
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.3e-147 525.8 384 67.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 4.4e-147 525.4 389 66.3
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 4.4e-147 525.4 391 67.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-147 525.4 385 68.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.4e-147 525.4 373 68.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 4.4e-147 525.4 378 68.3
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.7e-147 525.0 383 67.6
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 5.7e-147 525.0 383 67.4
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 5.7e-147 525.0 383 67.9
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.7e-147 525.0 378 66.9
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.7e-147 525.0 433 61.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.7e-147 525.0 378 66.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 5.7e-147 525.0 397 66.0
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 7.5e-147 524.6 383 67.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 7.5e-147 524.6 378 67.2
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 7.5e-147 524.6 391 67.0
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 7.5e-147 524.6 411 63.7
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 7.5e-147 524.6 378 67.2
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 9.7e-147 524.2 380 67.1
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 9.7e-147 524.2 378 67.5
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.7e-147 524.2 395 65.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.7e-146 523.5 439 62.0
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.7e-146 523.5 439 62.0
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.2e-146 523.1 377 68.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.2e-146 523.1 378 68.0
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.2e-146 523.1 430 62.8
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.8e-146 522.7 379 67.3
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.8e-146 522.7 378 67.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.7e-146 522.3 383 67.4
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.7e-146 522.3 377 67.9
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 4.8e-146 521.9 386 68.1
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 6.3e-146 521.5 388 65.5
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 8.2e-146 521.2 407 63.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.1e-145 520.8 386 64.8
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.4e-145 520.4 443 60.7
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.8e-145 520.0 383 67.4
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.8e-145 520.0 433 60.0
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.8e-145 520.0 378 66.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.4e-145 519.6 422 63.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 4.1e-145 518.8 384 66.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 4.1e-145 518.8 375 67.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 5.3e-145 518.5 379 65.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.0e-145 518.1 383 66.8
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 7.0e-145 518.1 352 70.5
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 7.0e-145 518.1 392 65.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.2e-144 517.3 383 66.3
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.2e-144 517.3 407 64.1
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 2.0e-144 516.5 369 69.4
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.0e-144 516.5 378 66.4
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 7.7e-144 514.6 374 67.6
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-143 514.2 379 65.2
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.0e-143 514.2 376 67.0
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.7e-143 513.5 387 66.4
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.0e-143 511.9 378 66.4
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 8.5e-143 511.1 351 68.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 8.5e-143 511.1 379 65.4
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.1e-142 510.8 374 67.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-142 510.0 392 63.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.5e-142 509.6 446 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 7.2e-142 508.1 351 69.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.4e-140 503.8 382 64.4
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 3.4e-139 499.2 434 59.0
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 2.8e-138 496.1 356 70.5
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.4e-137 493.8 392 61.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.6e-136 490.3 373 62.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 6.8e-132 474.9 336 67.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.1e-118 431.0 384 59.4
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.1e-117 426.8 339 65.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-115 421.0 362 56.6
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-114 417.5 312 65.4
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.2e-113 412.9 383 57.4
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.3e-110 402.9 388 55.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 5.6e-110 402.1 276 69.6
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.6e-110 402.1 284 68.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.1e-108 397.9 371 57.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 7.8e-104 381.7 446 47.8
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.6e-102 375.6 270 67.8
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.1e-101 373.6 332 56.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.8e-93 346.7 279 62.0
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.4e-92 344.4 252 66.7
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.2e-92 342.4 415 46.3
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.1e-88 330.5 292 58.6
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.6e-86 321.6 330 52.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 8.1e-85 318.5 214 70.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 9.0e-84 315.1 294 57.1
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 8.4e-82 308.5 249 64.3
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.9e-79 299.7 243 62.6
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.2e-73 280.0 206 67.5
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-72 277.7 275 56.4
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 2.1e-64 250.8 213 59.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 8.7e-63 245.4 222 58.6
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.6e-59 233.8 363 39.9
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.2e-57 226.9 178 62.9
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.0e-55 221.9 292 43.2
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.3e-54 216.9 124 79.0
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-51 208.0 149 65.1
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.7e-48 196.4 149 61.7
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.5e-43 181.4 130 66.9
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 3.5e-35 153.7 133 57.9
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.3e-30 137.1 85 71.8
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 6.1e-24 116.3 90 63.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 8.0e-24 115.9 113 55.8
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-22 112.1 97 57.7
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.0e-22 111.3 107 56.1
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.1e-20 105.5 118 52.5
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-18 98.6 77 62.3
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 2.6e-14 84.3 86 50.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 8.3e-13 79.3 65 61.5
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.6e-11 75.1 58 58.6
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 4.5e-11 73.6 50 68.0
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 3.8e-10 70.5 54 66.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 8.6e-10 69.3 68 51.5
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.5e-09 67.8 54 66.7


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