Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 4.2e-281 970.7 486 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-182 643.3 492 65.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 4.2e-172 608.6 483 64.0
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 8.7e-170 600.9 491 61.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-169 600.5 493 61.7
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 9.6e-169 597.4 485 60.8
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.3e-168 597.0 493 60.6
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.4e-167 592.8 490 61.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.3e-167 591.7 490 60.4
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.9e-167 591.3 491 60.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 9.0e-167 590.9 493 61.1
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 9.0e-167 590.9 493 60.2
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 9.0e-167 590.9 491 59.9
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 9.0e-167 590.9 491 59.7
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.0e-166 589.7 494 59.1
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.8e-166 588.2 490 60.2
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.3e-165 587.0 493 59.8
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.7e-165 586.6 491 59.3
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.7e-165 586.6 490 58.8
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.2e-165 586.3 489 59.9
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.9e-165 585.9 493 60.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.8e-165 585.5 493 59.6
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.8e-165 585.5 491 60.1
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 8.4e-165 584.3 490 59.4
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.4e-164 583.6 493 58.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.9e-164 583.2 490 59.2
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.2e-164 582.0 489 60.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.2e-164 582.0 491 58.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 7.1e-164 581.3 491 59.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.3e-164 580.9 490 59.2
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 9.3e-164 580.9 486 60.1
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.2e-163 580.5 488 59.6
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.2e-163 580.5 495 58.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.2e-163 580.5 497 58.4
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.2e-163 580.5 489 59.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.6e-163 580.1 483 58.6
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.6e-163 580.1 490 58.8
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.6e-163 580.1 490 58.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.1e-163 579.7 486 59.1
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.7e-163 579.3 489 59.9
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.6e-163 578.6 491 58.5
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.6e-163 578.6 486 59.3
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 4.6e-163 578.6 490 60.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.0e-162 577.4 486 58.6
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-162 577.0 492 58.9
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.3e-162 577.0 490 58.0
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.8e-162 576.6 491 57.2
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.3e-162 576.2 485 59.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-162 575.9 495 58.2
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.0e-162 575.9 517 56.9
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.0e-162 575.9 489 59.3
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.0e-162 575.9 489 58.7
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.1e-162 575.1 486 60.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 6.7e-162 574.7 495 58.2
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.1e-161 573.9 490 59.2
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.1e-161 573.9 489 58.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.5e-161 573.5 489 58.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.9e-161 573.2 492 59.1
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.9e-161 573.2 486 58.8
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.5e-161 572.8 491 57.8
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.5e-161 572.8 485 58.4
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.3e-161 572.4 487 57.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.3e-161 572.0 487 59.1
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 5.7e-161 571.6 507 57.0
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 7.4e-161 571.2 489 57.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.1e-160 569.7 486 58.6
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 3.7e-160 568.9 431 63.6
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 6.3e-160 568.2 490 60.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.1e-159 567.4 496 59.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.8e-159 566.6 485 58.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.8e-159 566.6 485 58.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.8e-159 566.6 486 58.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 5.3e-159 565.1 487 60.0
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.9e-159 564.7 486 58.4
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.5e-158 563.5 487 58.1
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.0e-158 563.1 487 58.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.6e-158 562.8 487 58.1
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.6e-158 562.8 487 58.1
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.6e-158 562.8 487 58.1
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 4.5e-158 562.0 487 59.3
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 5.9e-158 561.6 489 55.6
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.9e-158 561.6 487 58.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.3e-157 560.5 487 57.9
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.2e-157 559.7 487 57.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.2e-157 559.7 488 57.8
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.9e-157 559.3 487 58.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 8.5e-157 557.8 486 58.4
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.1e-156 557.4 487 58.3
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.4e-156 557.0 486 57.2
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.4e-156 557.0 487 57.3
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.9e-156 556.6 508 57.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 7.2e-156 554.7 491 55.4
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 9.3e-156 554.3 530 54.2
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.1e-155 551.6 495 56.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 7.9e-155 551.2 486 57.0
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.0e-154 550.8 494 58.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-154 550.8 489 58.7
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.8e-154 550.1 511 54.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 5.1e-154 548.5 442 62.4
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.1e-153 547.4 511 55.4
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.5e-153 547.0 500 56.8
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.4e-151 540.4 432 61.3
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.1e-151 538.9 486 58.0
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.5e-150 537.0 419 61.3
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.7e-149 533.5 439 61.0
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.1e-148 530.8 486 55.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.1e-147 526.6 477 57.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.0e-146 524.2 570 49.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 4.4e-145 518.8 507 54.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 6.9e-143 511.5 419 61.1
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.9e-140 503.4 522 52.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-139 500.7 560 50.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 3.5e-134 482.6 491 51.7
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 9.4e-132 474.6 489 50.7
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 4.0e-130 469.2 415 56.6
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.7e-118 429.9 417 55.6
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.0e-114 416.0 363 59.0
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 2.6e-105 386.7 299 60.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.4e-105 386.0 498 43.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 9.2e-103 378.3 531 45.2
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.3e-100 369.4 592 39.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.9e-92 344.0 253 63.6
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.2e-79 300.1 261 58.6
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-78 297.7 211 67.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.7e-77 294.3 548 38.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.6e-65 253.8 250 51.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 8.4e-64 248.8 220 60.5
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-60 238.4 374 42.5
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.9e-60 237.7 182 57.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.3e-53 214.2 496 32.5
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 9.6e-52 208.8 252 46.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.9e-47 194.5 191 57.6
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.0e-46 189.5 173 52.0
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.9e-37 160.2 443 29.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.4e-36 156.0 455 26.8
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-35 154.8 438 29.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.7e-35 154.8 390 27.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 4.8e-35 153.3 167 49.1
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 9.1e-26 122.5 211 37.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.5e-24 115.9 212 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-15 88.6 108 44.4
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-14 84.7 191 35.6
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-07 62.4 63 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.5e-07 60.1 68 51.5
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.2e-06 58.9 71 45.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 3.6e-06 57.4 73 46.6


User provided reference genes

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