Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.3e-168 594.3 317 100.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 7.6e-82 308.1 326 56.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.1e-67 259.6 251 52.6
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.3e-67 258.8 250 51.6
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.7e-65 253.8 265 47.5
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.9e-65 253.1 250 50.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.9e-65 253.1 259 49.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.8e-65 252.7 303 44.9
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.5e-64 250.0 255 48.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 5.5e-64 248.8 259 47.9
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.5e-64 248.8 268 48.5
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.2e-64 248.4 248 48.4
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 9.3e-64 248.1 251 50.6
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 9.3e-64 248.1 277 46.6
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.6e-63 247.3 243 51.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.6e-63 247.3 260 48.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 7.9e-63 245.0 240 48.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 7.9e-63 245.0 314 43.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 7.9e-63 245.0 251 49.8
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.0e-62 244.6 251 47.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.0e-62 244.6 251 48.6
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.0e-62 244.6 295 44.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.0e-62 244.6 310 43.5
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.3e-62 244.2 251 47.8
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.3e-62 244.2 272 47.4
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-62 243.8 243 48.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.8e-62 243.8 275 45.1
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.8e-62 243.8 317 44.5
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.3e-62 243.4 283 45.6
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.3e-62 243.4 264 46.6
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.3e-62 243.4 247 50.2
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 3.0e-62 243.0 263 48.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 3.9e-62 242.7 251 47.8
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.9e-62 242.7 260 48.1
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.9e-62 242.7 252 47.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.1e-62 242.3 272 47.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 5.1e-62 242.3 272 47.1
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.7e-62 241.9 243 48.1
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 6.7e-62 241.9 252 47.6
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.7e-62 241.9 243 48.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 6.7e-62 241.9 271 46.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.7e-62 241.9 251 48.6
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 8.7e-62 241.5 243 50.6
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 8.7e-62 241.5 272 47.4
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-61 241.1 293 45.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.5e-61 240.7 264 48.5
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.9e-61 240.4 289 45.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.9e-61 240.4 292 45.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.5e-61 240.0 268 44.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.5e-61 240.0 240 48.3
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.5e-61 240.0 268 48.1
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.3e-61 239.6 248 48.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.3e-61 239.6 288 44.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.3e-61 239.2 259 47.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 4.3e-61 239.2 249 49.4
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 4.3e-61 239.2 245 49.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 5.7e-61 238.8 283 43.5
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.4e-61 238.4 248 47.6
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.7e-61 238.0 288 43.8
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 9.7e-61 238.0 238 49.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.3e-60 237.7 259 44.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.3e-60 237.7 233 50.2
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-60 237.3 305 42.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.6e-60 237.3 300 42.3
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.6e-60 237.3 249 49.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.6e-60 237.3 340 41.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.2e-60 236.9 262 43.9
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.8e-60 236.5 251 49.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 3.7e-60 236.1 229 55.0
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-59 234.2 256 46.5
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-59 233.8 321 42.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-59 233.8 321 42.4
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.4e-59 233.4 244 48.0
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.1e-59 233.0 261 46.7
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.0e-58 230.3 259 43.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.0e-58 230.3 240 48.3
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 4.5e-58 229.2 307 43.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 4.5e-58 229.2 308 44.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.3e-57 227.6 286 41.3
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.2e-57 226.9 240 46.7
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.9e-57 226.5 279 40.9
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.9e-57 226.5 233 49.4
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 5.0e-57 225.7 242 46.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 5.0e-57 225.7 233 47.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 8.5e-57 224.9 251 44.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.1e-56 224.6 234 44.4
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.1e-56 224.6 250 46.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.4e-56 224.2 226 49.1
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.5e-56 223.4 266 46.2
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 4.2e-56 222.6 228 49.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 7.2e-56 221.9 227 44.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 7.2e-56 221.9 227 44.9
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 7.2e-56 221.9 231 48.5
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.2e-56 221.9 286 43.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 9.4e-56 221.5 241 44.8
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 9.4e-56 221.5 291 38.8
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-55 221.1 260 43.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.2e-55 221.1 274 44.2
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.1e-55 220.3 241 44.4
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.1e-55 220.3 232 45.7
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.6e-55 219.2 227 44.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.9e-55 218.4 289 40.1
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.9e-55 218.4 239 44.8
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.4e-54 217.6 274 42.0
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.8e-54 217.2 264 43.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.8e-54 217.2 250 46.0
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 3.9e-54 216.1 258 43.8
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.9e-54 216.1 228 47.4
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.1e-54 215.7 354 36.2
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.7e-54 215.3 258 43.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-53 214.5 280 43.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-53 214.5 304 38.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.0e-53 213.8 300 41.3
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.4e-53 212.6 287 43.6
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.7e-53 212.2 268 44.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 5.7e-53 212.2 300 41.3
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.8e-52 209.9 299 39.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.1e-51 208.0 273 39.2
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.1e-51 208.0 237 41.8
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.1e-51 206.1 240 45.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 5.3e-51 205.7 243 46.1
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.3e-51 205.7 304 38.5
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.5e-50 204.1 277 44.4
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.1e-48 198.0 235 42.6
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.5e-48 196.8 226 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 5.5e-48 195.7 192 51.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.7e-47 193.4 240 42.5
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.7e-47 192.6 210 46.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.1e-47 192.2 246 41.5
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-45 188.0 220 45.9
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-45 186.4 340 34.7
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.7e-45 185.7 318 36.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.3e-44 184.5 262 38.9
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.2e-44 183.7 248 39.1
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.7e-44 183.0 327 36.4
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.2e-40 169.5 228 41.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 9.4e-40 168.3 175 47.4
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-39 166.8 218 39.9
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.6e-37 160.2 214 43.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.6e-31 141.0 146 55.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.0e-29 134.0 386 25.9
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.0e-29 134.0 128 48.4
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 3.4e-29 133.3 146 45.2
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 4.8e-28 129.4 139 51.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 8.3e-28 128.6 154 38.3
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-27 128.3 133 52.6
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.8e-22 110.9 305 27.5
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.0e-18 97.4 94 51.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.1e-11 73.2 76 40.8
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.6e-10 71.2 61 59.0
Gohir.A05G174100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 2.0e-10 70.9 207 29.0
Gohir.D05G177100 Gossypium hirsutum HOM05D002234 ORTHO05D002254 2.0e-10 70.9 207 29.0
Gorai.009G182500 Gossypium raimondii HOM05D002234 ORTHO05D002254 2.0e-10 70.9 207 29.0
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 2.7e-10 70.5 210 28.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 3.9e-09 66.6 72 41.7
Gohir.A09G068000 Gossypium hirsutum HOM05D002234 ORTHO05D002254 8.6e-09 65.5 201 28.4
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.1e-08 65.1 73 35.6
Gohir.D09G068000 Gossypium hirsutum HOM05D002234 ORTHO05D002254 4.3e-08 63.2 201 27.9
Gorai.006G082400 Gossypium raimondii HOM05D002234 ORTHO05D002254 4.3e-08 63.2 201 27.9
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 9.5e-08 62.0 252 27.8
MBI19_g03680_MAGBIO Magnolia biondii HOM05D002234 ORTHO05D002254 1.2e-07 61.6 267 26.6
ATR0624G044 Amborella trichopoda HOM05D002234 ORTHO05D002254 1.6e-07 61.2 296 27.0
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 1.6e-07 61.2 196 27.0
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 2.8e-07 60.5 209 26.8
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.7e-07 59.7 254 27.2
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 6.2e-07 59.3 235 25.5
Manes.16G002400 Manihot esculenta HOM05D002234 ORTHO05D002254 8.0e-07 58.9 204 26.5
Medtr2g025040 Medicago truncatula HOM05D002234 ORTHO05D002254 1.1e-06 58.5 257 27.2
Rhsim13G0149600 Rhododendron simsii HOM05D002234 ORTHO05D002254 1.8e-06 57.8 211 26.5
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 1.8e-06 57.8 212 23.6
Zm00001eb423920 Zea mays HOM05D002234 ORTHO05D002254 2.3e-06 57.4 318 27.4
CARHR129640 Cardamine hirsuta HOM05D002234 ORTHO05D002254 3.1e-06 57.0 202 25.2
Ca_00698_v3 Cicer arietinum L. HOM05D002234 ORTHO05D002254 3.1e-06 57.0 207 27.1
Glyma.09G008100 Glycine max HOM05D002234 ORTHO05D002254 3.1e-06 57.0 216 26.9
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.0e-06 56.6 50 48.0
unitig_744.g24517 Utricularia gibba HOM05D002234 ORTHO05D002254 4.0e-06 56.6 281 28.5
AT2G35490 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 6.8e-06 55.8 202 25.2
Medtr2g025050 Medicago truncatula HOM05D002234 ORTHO05D002254 6.8e-06 55.8 261 28.4
Peaxi162Scf00708g00012 Petunia axillaris HOM05D002234 ORTHO05D002254 6.8e-06 55.8 210 24.8
Psat1g177680 Pisum sativum HOM05D002234 ORTHO05D002254 6.8e-06 55.8 211 28.0
PGSC0003DMG400016727 Solanum tuberosum HOM05D002234 ORTHO05D002254 6.8e-06 55.8 210 24.8
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 6.8e-06 55.8 235 26.8
Solyc02g081170.4 Solanum lycopersicum HOM05D002234 ORTHO05D002254 8.9e-06 55.5 210 24.8


User provided reference genes

Program Settings