Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.1e-178 629.8 305 100.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.8e-79 298.5 244 61.5
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.9e-74 283.5 268 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 3.0e-67 259.6 280 48.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.7e-65 252.7 284 50.0
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 2.4e-64 250.0 305 47.5
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.9e-64 248.4 281 49.1
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 6.9e-64 248.4 270 47.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.0e-64 248.1 262 52.7
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.2e-63 247.7 277 49.5
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.0e-63 246.9 281 49.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.6e-63 246.5 262 51.5
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 3.4e-63 246.1 278 47.1
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 3.4e-63 246.1 277 48.4
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 3.4e-63 246.1 299 45.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 4.5e-63 245.7 290 48.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 5.8e-63 245.4 265 49.1
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 7.6e-63 245.0 274 48.9
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 9.9e-63 244.6 259 49.4
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 9.9e-63 244.6 282 47.5
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.7e-62 243.8 262 51.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.7e-62 243.8 265 51.3
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.7e-62 243.8 302 46.7
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 2.9e-62 243.0 286 48.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.9e-62 243.0 263 51.3
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.8e-62 242.7 265 48.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.9e-62 242.3 262 51.1
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 8.4e-62 241.5 276 48.9
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.1e-61 241.1 290 46.6
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.4e-61 240.7 284 48.6
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.9e-61 240.4 290 46.6
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.4e-61 240.0 276 48.2
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 4.2e-61 239.2 253 51.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 5.5e-61 238.8 303 43.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 7.1e-61 238.4 274 47.1
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 9.3e-61 238.0 274 47.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 9.3e-61 238.0 260 48.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.2e-60 237.7 288 44.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.6e-60 237.3 269 47.2
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.7e-60 236.5 269 47.2
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 3.5e-60 236.1 274 47.1
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.6e-60 235.7 301 44.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.6e-60 235.7 305 44.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 6.0e-60 235.3 267 49.1
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 6.0e-60 235.3 292 44.2
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 6.0e-60 235.3 285 48.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.9e-60 235.0 256 48.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 7.9e-60 235.0 264 49.2
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 7.9e-60 235.0 273 47.3
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.0e-59 234.6 277 46.6
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.0e-59 234.6 289 47.8
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.0e-59 234.6 248 51.2
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.0e-59 234.6 248 51.2
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.3e-59 234.2 275 46.9
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.3e-59 233.4 277 47.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.0e-59 233.0 276 45.7
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 3.9e-59 232.6 277 45.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.9e-59 232.6 268 49.3
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 3.9e-59 232.6 276 48.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 5.1e-59 232.3 262 49.2
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.7e-59 231.9 265 46.0
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.7e-59 231.9 258 47.7
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 8.7e-59 231.5 275 48.0
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 8.7e-59 231.5 230 53.0
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 8.7e-59 231.5 306 43.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.1e-58 231.1 262 49.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.5e-58 230.7 299 43.8
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.9e-58 230.3 258 46.9
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.9e-58 230.3 282 47.2
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.9e-58 230.3 267 49.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.9e-58 230.3 275 48.0
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.5e-58 229.9 297 45.5
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.5e-58 229.9 283 46.6
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.3e-58 229.6 264 49.2
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.3e-58 229.6 249 49.8
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.3e-58 229.2 267 47.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 7.4e-58 228.4 276 45.7
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 9.6e-58 228.0 234 52.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.6e-58 228.0 268 48.9
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.1e-57 226.9 307 44.0
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.1e-57 226.9 299 43.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.8e-57 226.5 290 43.4
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.4e-56 224.2 288 45.8
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.1e-56 223.0 278 44.2
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.0e-56 222.6 273 44.7
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.0e-56 222.6 273 44.7
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 5.3e-56 222.2 382 36.6
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 5.3e-56 222.2 296 44.3
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.0e-56 221.5 296 41.9
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.6e-55 219.9 300 41.7
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.3e-54 217.6 275 45.8
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.7e-54 217.2 264 47.3
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.8e-54 216.1 224 50.4
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 6.5e-54 215.3 269 44.2
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 6.5e-54 215.3 282 41.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.2e-52 211.1 203 53.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.8e-51 207.2 232 47.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 3.0e-51 206.5 225 48.0
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.5e-50 203.4 232 47.4
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 4.3e-50 202.6 220 50.5
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-49 200.7 274 40.9
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-49 200.7 274 40.9
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.6e-49 200.7 274 40.9
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.6e-49 200.7 275 41.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 3.7e-49 199.5 288 39.2
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.7e-49 199.5 275 40.7
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 4.8e-49 199.1 248 42.7
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.1e-48 198.0 292 39.7
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.4e-48 196.8 262 41.2
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 5.3e-48 195.7 260 40.4
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.5e-47 194.1 245 42.9
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-47 194.1 273 41.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.5e-47 194.1 290 40.0
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 7.6e-47 191.8 260 40.0
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 9.3e-45 184.9 261 43.7
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 2.1e-44 183.7 232 43.5
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.3e-43 180.3 203 44.8
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 6.7e-43 178.7 233 44.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 7.4e-42 175.3 234 41.0
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.1e-40 169.9 219 44.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.1e-40 169.5 182 49.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 3.8e-38 162.9 298 35.2
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 6.5e-38 162.2 264 38.6
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.9e-37 160.6 160 51.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.2e-36 157.9 114 63.2
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.4e-26 122.9 173 43.9
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 9.7e-26 121.7 226 35.0
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.1e-24 116.7 187 35.3
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 6.7e-19 99.0 128 43.0
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 5.7e-18 95.9 80 61.2
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 5.0e-14 82.8 185 31.9
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.4e-08 64.7 256 25.8
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.0e-07 60.8 47 61.7


User provided reference genes

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