Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.5e-192 676.0 338 100.0
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.8e-98 362.8 331 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.1e-91 340.9 327 54.1
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.1e-91 340.9 328 51.8
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.4e-89 334.0 331 51.7
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.1e-81 307.8 329 49.5
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 6.9e-81 305.1 333 47.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.1e-77 293.5 330 45.8
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.7e-77 293.1 333 46.2
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 1.3e-76 290.8 330 46.4
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.0e-76 289.7 332 44.9
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 3.9e-76 289.3 333 46.2
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 5.1e-76 288.9 332 45.2
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.9e-75 287.0 325 45.8
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.9e-75 287.0 325 44.9
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 4.3e-75 285.8 332 42.5
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 7.4e-75 285.0 333 45.6
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 9.6e-75 284.6 325 45.2
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 1.3e-74 284.3 331 45.6
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 3.7e-74 282.7 325 44.3
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.7e-74 282.7 330 45.2
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.7e-74 282.7 331 45.6
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 3.7e-74 282.7 332 45.8
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 6.2e-74 282.0 331 45.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.1e-73 281.2 329 44.7
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 1.1e-73 281.2 331 45.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.4e-73 280.8 333 44.1
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.8e-73 280.4 325 46.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.4e-73 280.0 329 45.3
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 5.3e-73 278.9 331 45.3
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 5.3e-73 278.9 333 45.0
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 5.3e-73 278.9 326 44.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 9.0e-73 278.1 332 45.2
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.0e-73 278.1 329 45.0
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.2e-72 277.7 332 44.9
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.5e-72 277.3 334 44.6
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.5e-72 277.3 330 44.5
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.5e-72 277.3 325 44.6
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 2.0e-72 276.9 332 45.2
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.0e-72 276.9 326 44.5
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.0e-72 276.9 328 44.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.0e-72 276.9 364 42.6
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 2.0e-72 276.9 327 44.3
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.6e-72 276.6 332 44.9
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 3.4e-72 276.2 331 46.2
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 5.8e-72 275.4 331 45.6
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.8e-72 275.4 331 45.9
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.8e-72 275.4 331 45.9
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.8e-72 275.4 332 44.6
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 7.6e-72 275.0 332 43.7
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 7.6e-72 275.0 295 45.8
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.6e-72 275.0 368 42.7
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 9.9e-72 274.6 331 44.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 9.9e-72 274.6 331 45.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 9.9e-72 274.6 331 44.4
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.3e-71 274.2 331 45.0
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.8e-71 272.7 336 44.0
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 6.4e-71 271.9 331 45.0
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 8.4e-71 271.6 331 45.3
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.1e-70 271.2 330 43.3
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.4e-70 270.8 330 45.2
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.9e-70 270.4 331 45.0
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.9e-70 270.4 331 45.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.9e-70 270.4 332 46.4
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.9e-70 270.4 330 43.0
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 5.5e-70 268.9 332 46.1
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 7.1e-70 268.5 331 44.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 9.3e-70 268.1 330 44.8
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.3e-70 268.1 333 42.3
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 9.3e-70 268.1 328 42.7
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 9.3e-70 268.1 340 43.5
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.2e-69 267.7 369 39.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 2.7e-69 266.5 329 46.8
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.5e-69 266.2 325 42.2
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.6e-69 265.8 334 44.9
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.3e-68 264.2 329 43.5
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.3e-68 263.5 330 43.3
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 5.1e-68 262.3 378 41.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 5.1e-68 262.3 330 43.3
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.1e-67 261.2 327 44.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 4.3e-67 259.2 348 41.7
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.8e-66 256.5 331 42.6
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.2e-66 255.4 331 43.5
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.1e-65 254.6 340 42.6
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.0e-64 250.4 340 42.1
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.6e-64 248.4 313 43.1
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.3e-63 247.7 354 41.0
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.9e-63 246.5 331 40.5
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.4e-62 244.2 303 44.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 6.0e-61 238.8 334 41.0
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 7.9e-61 238.4 332 37.7
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.0e-60 238.0 324 41.4
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-60 238.0 335 40.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.3e-60 236.9 281 45.6
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 3.9e-60 236.1 253 46.2
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.5e-59 234.2 380 36.3
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.5e-59 233.4 328 37.5
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.7e-59 232.3 295 41.7
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.7e-59 232.3 217 52.1
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.1e-57 228.0 336 40.5
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 6.9e-57 225.3 234 49.1
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.2e-56 224.6 217 50.2
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.0e-55 221.5 334 38.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.0e-55 219.2 330 37.9
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.5e-54 216.9 261 44.1
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.7e-53 213.4 185 53.5
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.9e-52 209.5 247 46.6
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 2.5e-51 206.8 258 42.2
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.3e-50 204.5 332 37.3
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 8.2e-50 201.8 297 39.1
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.4e-49 200.3 185 51.9
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 2.7e-45 186.8 358 33.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.4e-41 173.7 162 51.9
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.3e-41 172.6 187 47.1
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.2e-40 171.4 348 32.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 8.5e-39 165.2 315 34.9
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.9e-38 164.1 316 34.8
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.7e-37 160.2 169 46.2
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 4.7e-37 159.5 164 47.0
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.6e-32 144.4 353 30.9
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.8e-28 131.0 338 29.9
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.0e-27 127.5 122 46.7
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 4.8e-26 122.9 170 40.6
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.0e-20 105.1 202 35.6
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 5.7e-19 99.4 144 38.2
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 3.3e-14 83.6 143 35.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 8.3e-10 68.9 73 46.6
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.8e-09 67.8 176 29.5
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.0e-08 64.3 91 40.7
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.7e-08 63.9 59 52.5
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.8e-07 60.1 65 47.7


User provided reference genes

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