Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 0.0e+00 1956.0 995 100.0
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 0.0e+00 1296.6 1002 64.7
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 0.0e+00 1112.4 988 58.4
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 1.7e-300 1036.2 1000 52.9
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 3.1e-299 1031.9 999 52.7
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 1.7e-297 1026.2 1000 52.5
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 1.9e-296 1022.7 998 52.5
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 4.2e-296 1021.5 1002 51.9
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 2.7e-295 1018.8 1000 52.3
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 6.1e-295 1017.7 972 53.6
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 8.0e-295 1017.3 1000 52.4
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 3.0e-294 1015.4 987 52.2
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 8.8e-294 1013.8 987 52.0
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 6.3e-292 1007.7 1002 52.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 4.1e-291 1005.0 977 51.9
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 2.7e-290 1002.3 998 51.2
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 2.7e-290 1002.3 1000 50.8
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 2.2e-289 999.2 1002 51.1
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 2.2e-289 999.2 998 51.3
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 3.8e-289 998.4 994 51.6
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 6.5e-289 997.7 999 50.7
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 1.5e-288 996.5 1001 51.4
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 2.1e-287 992.6 1001 50.8
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 1.0e-286 990.3 1001 50.9
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 3.0e-286 988.8 998 50.7
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 2.0e-285 986.1 1001 51.0
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 4.4e-285 984.9 1003 50.3
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 5.7e-285 984.6 1082 48.2
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 4.9e-284 981.5 1006 49.9
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 6.3e-284 981.1 999 50.3
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 9.2e-283 977.2 999 50.4
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 1.2e-282 976.9 1000 50.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 2.7e-282 975.7 998 49.8
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 1.0e-281 973.8 999 50.6
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.0e-281 973.8 1001 50.0
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 1.0e-281 973.8 1005 50.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 1.3e-281 973.4 993 49.6
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 2.3e-281 972.6 1001 50.0
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 2.3e-281 972.6 1001 50.3
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 3.8e-281 971.8 999 49.3
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 3.8e-281 971.8 1023 50.2
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 5.0e-281 971.5 1000 50.1
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 6.6e-281 971.1 1002 50.7
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 8.6e-281 970.7 999 49.8
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 1.1e-280 970.3 999 49.8
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 1.5e-280 969.9 1001 50.6
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 3.3e-280 968.8 1000 50.0
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 7.3e-280 967.6 999 50.1
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 7.3e-280 967.6 999 49.9
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 1.2e-279 966.8 993 50.4
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.6e-279 966.5 994 49.7
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 1.6e-279 966.5 993 50.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 3.6e-279 965.3 999 49.7
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 3.6e-279 965.3 999 49.8
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 6.1e-279 964.5 968 50.7
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 8.0e-279 964.1 1013 49.7
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 3.0e-278 962.2 1000 49.6
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 4.0e-278 961.8 1001 49.7
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 6.8e-278 961.1 993 49.4
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 5.7e-277 958.0 1001 49.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 5.7e-277 958.0 1000 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 9.8e-277 957.2 915 55.0
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 9.8e-277 957.2 1001 48.9
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 2.9e-276 955.7 998 49.7
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 1.8e-275 953.0 1001 49.5
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 1.8e-275 953.0 999 49.4
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 1.8e-275 953.0 994 49.5
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 1.8e-275 953.0 976 50.3
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 2.4e-275 952.6 992 49.4
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 9.2e-275 950.7 993 49.2
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 1.6e-274 949.9 998 48.8
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 1.6e-274 949.9 977 49.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 2.7e-274 949.1 1012 49.1
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 4.6e-274 948.3 1000 48.4
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 7.8e-274 947.6 1003 49.2
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 1.5e-272 943.3 1001 49.3
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 3.3e-272 942.2 971 49.6
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 3.3e-272 942.2 998 48.5
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 7.3e-272 941.0 993 49.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 3.7e-268 928.7 1002 49.3
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 6.4e-268 927.9 1004 47.8
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 1.4e-267 926.8 992 49.0
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 1.2e-266 923.7 998 48.5
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 1.3e-265 920.2 998 48.4
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 6.6e-265 917.9 989 47.7
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 6.6e-265 917.9 989 47.7
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 3.3e-264 915.6 997 48.3
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 1.2e-263 913.7 1032 47.9
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 2.8e-263 912.5 997 48.2
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 3.6e-263 912.1 1002 48.9
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 3.6e-263 912.1 1006 48.0
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 6.2e-263 911.4 1086 46.7
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 3.1e-262 909.1 971 49.1
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 3.4e-261 905.6 998 46.6
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 7.5e-261 904.4 996 48.2
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 3.2e-259 899.0 997 48.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.4e-259 898.3 918 50.8
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 5.4e-259 898.3 1000 47.4
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 9.2e-259 897.5 1001 47.2
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 6.0e-258 894.8 1000 47.5
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 7.3e-256 887.9 929 49.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 6.8e-254 881.3 998 47.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.5e-253 880.2 1001 46.9
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 2.4e-251 872.8 981 47.9
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 3.3e-248 862.4 928 48.6
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 2.8e-247 859.4 808 55.4
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 2.9e-236 822.8 1009 45.3
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 2.1e-234 816.6 917 47.0
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 4.0e-230 802.4 1006 44.1
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.4e-227 793.1 1006 43.3
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 7.4e-224 781.6 867 48.1
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 6.2e-223 778.5 1009 43.7
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.2e-218 764.2 999 41.3
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 6.9e-206 721.8 919 42.5
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.5e-195 686.8 754 49.2
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.7e-194 683.3 732 49.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 4.4e-184 649.4 851 42.7
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.0e-173 614.0 607 51.4
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.7e-172 610.9 599 51.8
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 4.9e-151 539.7 624 46.5
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 9.9e-136 488.8 1191 30.1
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.3e-108 398.7 434 48.6
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 6.5e-103 379.8 306 56.9
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 3.3e-99 367.5 304 56.6
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 5.3e-97 360.1 355 50.7
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 6.9e-89 333.2 1084 27.4
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.8e-60 238.8 264 45.5
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.8e-60 238.8 264 45.5
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.6e-45 189.1 951 23.6
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.4e-43 181.4 240 42.9
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.8e-20 105.9 144 37.5
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.9e-18 98.6 120 50.0
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 3.2e-17 95.1 144 35.4
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 8.7e-15 87.0 91 46.2
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.1e-14 86.7 87 43.7
CBR_g23104 Chara braunii HOM05D002636 ORTHO05D003490 6.4e-10 70.9 919 19.6
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.2e-09 68.2 94 42.6
BolC1t05847H Brassica oleracea HOM05D002636 ORTHO05D003490 2.1e-08 65.9 233 24.0
BcaB04g21382 Brassica carinata HOM05D002636 ORTHO05D003490 4.6e-08 64.7 233 24.0
MCO05G721 Micromonas commoda HOM05D002636 ORTHO05D003490 1.0e-07 63.5 244 21.7
BNapus_Darmor_BZH_scaffold_129p00010 Brassica napus HOM05D002636 ORTHO05D003490 3.0e-07 62.0 725 19.9
Pp3c10_5440 Physcomitrium patens HOM05D002636 ORTHO05D003490 5.1e-07 61.2 248 21.4
Mapoly0074s0001 Marchantia polymorpha HOM05D002636 ORTHO05D003490 6.6e-07 60.8 253 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2707 Anthoceros agrestis HOM05D002636 ORTHO05D003490 1.5e-06 59.7 250 22.0
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 1.5e-06 59.7 250 21.2
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 1.5e-06 59.7 250 21.2


User provided reference genes

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