Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 0.0e+00 2338.9 1188 100.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.8e-302 1042.3 1189 50.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 1.8e-293 1013.1 1212 48.0
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 2.6e-292 1009.2 1189 48.8
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 7.5e-292 1007.7 1200 48.7
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 1.3e-291 1006.9 1199 48.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 4.9e-291 1005.0 1204 47.9
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 3.2e-290 1002.3 1212 47.9
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 4.1e-290 1001.9 1213 48.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 2.1e-289 999.6 1213 47.7
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 4.6e-289 998.4 1200 47.8
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.3e-288 996.1 1204 47.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 3.9e-288 995.3 1209 47.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 6.6e-288 994.6 1209 47.8
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 1.5e-287 993.4 1203 48.0
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.9e-287 993.0 1207 47.1
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 2.5e-287 992.6 1213 47.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.5e-287 992.6 1214 47.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.2e-286 990.3 1207 47.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 2.1e-286 989.6 1202 47.3
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 2.1e-286 989.6 1213 47.7
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 2.8e-286 989.2 1221 48.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 4.7e-286 988.4 1201 47.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 6.2e-286 988.0 1209 47.4
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 8.1e-286 987.6 1207 47.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 8.1e-286 987.6 1207 47.3
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.1e-285 987.3 1207 47.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 2.4e-285 986.1 1214 47.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.4e-285 986.1 1216 47.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 2.4e-285 986.1 1222 46.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 4.0e-285 985.3 1195 46.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 6.8e-285 984.6 1214 46.3
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 1.5e-284 983.4 1210 47.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.5e-284 983.4 1208 47.4
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 2.6e-284 982.6 1202 47.2
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 3.4e-284 982.2 1206 47.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 9.9e-284 980.7 1191 47.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 9.9e-284 980.7 1216 47.1
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 9.9e-284 980.7 1217 47.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.3e-283 980.3 1211 46.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 1.3e-283 980.3 1212 46.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 2.2e-283 979.5 1210 47.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 3.8e-283 978.8 1208 47.0
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 4.9e-283 978.4 1250 46.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 6.4e-283 978.0 1207 46.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.1e-282 977.2 1246 46.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.4e-282 976.9 1224 46.4
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 1.4e-282 976.9 1206 47.1
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 4.2e-282 975.3 1195 46.2
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.1e-282 974.5 1221 46.9
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 7.1e-282 974.5 1200 47.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 2.1e-281 973.0 1217 47.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.7e-281 972.6 1258 46.5
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.5e-281 972.2 1258 46.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 4.6e-281 971.8 1191 46.3
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 6.0e-281 971.5 1206 46.6
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 6.0e-281 971.5 1203 46.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 6.0e-281 971.5 1209 46.8
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 1.3e-280 970.3 1203 46.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 2.3e-280 969.5 1227 45.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 3.9e-280 968.8 1202 46.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 5.1e-280 968.4 1195 45.9
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 6.6e-280 968.0 1200 46.7
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.5e-279 966.8 1204 47.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 1.5e-279 966.8 1204 47.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 1.5e-279 966.8 1198 46.2
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.9e-279 966.5 1258 46.1
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.9e-279 966.5 1213 46.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 1.9e-279 966.5 1265 45.8
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 2.5e-279 966.1 1211 46.1
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 4.3e-279 965.3 1195 46.2
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 5.6e-279 964.9 1211 46.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 5.6e-279 964.9 1213 46.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 7.3e-279 964.5 1203 46.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 7.3e-279 964.5 1206 46.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.3e-278 963.8 1217 46.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 1.6e-278 963.4 1204 46.4
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 2.1e-278 963.0 1201 46.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 2.1e-278 963.0 1239 46.8
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 4.8e-278 961.8 1244 46.1
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 4.8e-278 961.8 1239 46.7
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 8.1e-278 961.1 1204 46.4
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 5.3e-277 958.4 1192 46.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 5.3e-277 958.4 1210 46.6
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 9.0e-277 957.6 1209 46.3
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 1.2e-276 957.2 1198 46.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 2.0e-276 956.4 1203 46.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 2.0e-276 956.4 1196 46.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 3.4e-276 955.7 1198 46.5
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 5.8e-276 954.9 1196 45.3
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 1.7e-275 953.4 1212 46.4
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 2.9e-275 952.6 1201 45.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 4.9e-275 951.8 1238 45.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 6.4e-275 951.4 1206 46.0
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 8.4e-275 951.0 1215 46.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 8.4e-275 951.0 1198 45.7
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 1.1e-274 950.7 1216 46.0
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 7.1e-274 948.0 1256 44.3
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 7.1e-274 948.0 1210 45.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 1.6e-273 946.8 1206 46.4
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 1.6e-273 946.8 1247 45.0
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.1e-273 946.4 1262 44.1
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 2.7e-273 946.0 1195 46.9
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 3.5e-273 945.7 1202 45.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 1.0e-272 944.1 1207 45.7
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 5.1e-272 941.8 1209 45.1
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 5.1e-272 941.8 1259 44.7
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.3e-270 937.2 1219 46.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.8e-270 936.0 1199 46.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 1.7e-267 926.8 1207 44.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 4.2e-266 922.2 1266 43.9
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 3.9e-264 915.6 1209 45.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.5e-263 912.9 1205 44.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 2.6e-260 902.9 1209 43.8
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 3.4e-260 902.5 1248 44.1
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 4.9e-259 898.7 1109 47.1
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.5e-258 896.3 1191 45.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 7.6e-252 874.8 1129 46.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.4e-245 853.2 1140 44.1
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 2.0e-244 850.1 1201 42.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 1.4e-242 844.0 1119 45.8
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.1e-229 801.2 977 47.5
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 1.1e-229 801.2 984 47.4
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 2.0e-228 797.0 985 46.9
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 2.0e-223 780.4 992 46.6
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 9.7e-223 778.1 1107 42.6
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 3.5e-212 743.0 1186 39.7
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 7.2e-210 735.3 816 50.2
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.7e-204 716.8 1185 38.9
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.1e-194 684.9 1069 42.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 6.1e-193 679.1 979 42.7
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 4.0e-184 649.8 1008 42.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.4e-182 642.5 545 59.8
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.6e-180 637.9 922 42.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.7e-171 607.8 999 39.8
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.6e-153 548.1 860 40.6
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.9e-149 534.6 419 63.2
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 7.1e-149 532.7 890 39.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 2.4e-144 517.7 829 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.1e-140 504.6 816 40.0
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 7.2e-133 479.6 753 42.0
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-129 468.8 737 41.2
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.2e-118 431.4 363 60.6
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 3.8e-118 430.6 1331 30.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 7.7e-103 379.8 633 39.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.7e-100 370.5 306 61.4
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.7e-100 370.5 306 61.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 9.8e-98 362.8 305 59.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.4e-88 331.6 284 58.8
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 7.0e-72 276.9 475 38.9
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 6.0e-63 247.3 246 50.8
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.1e-59 236.5 225 52.9
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.1e-55 222.2 281 45.6
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 5.8e-50 204.1 186 54.8
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 5.8e-50 204.1 182 57.7
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.7e-41 176.0 234 44.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.5e-37 162.9 133 62.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.5e-37 162.2 185 49.2
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 4.3e-37 161.4 206 47.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 4.8e-36 157.9 118 66.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.6e-34 152.1 132 57.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-34 152.1 271 35.4
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 9.3e-32 143.7 144 50.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 5.1e-30 137.9 183 42.1
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 6.7e-30 137.5 183 44.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-29 136.0 92 72.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.2e-16 90.9 80 62.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.1e-11 77.0 165 32.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.2e-10 73.6 48 68.8
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.2e-10 73.6 54 61.1
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.6e-10 72.4 47 68.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 9.4e-08 63.9 85 44.7
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 6.1e-07 61.2 91 40.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 6.1e-07 61.2 91 40.7
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.3e-06 59.3 88 40.9


User provided reference genes

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