Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 4.0e-248 861.3 545 100.0
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 3.5e-26 124.0 441 40.4
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 7.8e-26 122.9 165 50.3
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.9e-24 118.2 314 36.3
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.2e-23 115.5 308 40.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 2.1e-23 114.8 315 33.7
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 4.7e-23 113.6 317 42.6
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 2.3e-22 111.3 326 36.5
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.3e-22 111.3 328 32.6
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.3e-22 111.3 173 42.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 3.1e-22 110.9 307 37.5
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 3.1e-22 110.9 164 45.1
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.1e-22 110.9 164 45.1
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 2.0e-21 108.2 172 45.9
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 5.8e-21 106.7 169 43.8
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 2.9e-20 104.4 172 45.9
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 4.9e-20 103.6 315 35.2
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 4.9e-20 103.6 184 42.4
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 4.9e-20 103.6 317 38.5
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.4e-19 102.1 322 41.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.9e-19 101.7 313 37.4
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.4e-19 101.3 172 45.3
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 2.4e-19 101.3 172 45.3
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.2e-19 100.9 179 36.9
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 3.2e-19 100.9 314 32.2
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 3.2e-19 100.9 181 48.1
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 3.2e-19 100.9 317 34.4
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 5.4e-19 100.1 342 31.3
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 9.2e-19 99.4 168 40.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.2e-18 99.0 305 32.8
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.7e-18 97.8 321 35.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.7e-18 97.8 325 36.6
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 2.7e-18 97.8 316 40.5
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.5e-18 97.4 330 38.5
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 4.6e-18 97.1 320 30.3
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 4.6e-18 97.1 320 30.3
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 4.6e-18 97.1 170 38.2
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 7.8e-18 96.3 349 32.1
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 7.8e-18 96.3 338 31.7
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 7.8e-18 96.3 330 38.2
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.8e-18 96.3 319 31.3
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.0e-17 95.9 338 32.8
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.0e-17 95.9 306 31.4
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.3e-17 95.5 282 33.7
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 1.3e-17 95.5 349 40.1
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.7e-17 95.1 289 29.8
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.7e-17 95.1 184 40.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.3e-17 94.7 176 44.3
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.3e-17 94.7 337 35.6
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.3e-17 94.7 168 37.5
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.0e-17 94.4 168 42.9
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 3.9e-17 94.0 180 32.2
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 5.1e-17 93.6 171 37.4
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.1e-17 93.6 165 45.5
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 6.6e-17 93.2 330 31.8
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 6.6e-17 93.2 319 35.7
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 6.6e-17 93.2 157 43.9
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 8.6e-17 92.8 310 33.2
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.5e-16 92.0 171 43.3
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.5e-16 92.0 194 41.2
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.9e-16 91.7 185 41.6
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.9e-16 91.7 318 31.4
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 1.9e-16 91.7 158 38.0
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.9e-16 91.7 188 43.1
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 2.5e-16 91.3 166 41.6
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.5e-16 91.3 245 44.1
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.3e-16 90.9 350 31.4
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.3e-16 90.9 336 31.2
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.3e-16 90.9 341 31.1
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 4.3e-16 90.5 318 35.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 5.6e-16 90.1 332 35.5
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.6e-16 90.1 140 42.9
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 7.3e-16 89.7 304 32.6
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 7.3e-16 89.7 320 29.4
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 7.3e-16 89.7 320 29.4
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 7.3e-16 89.7 189 38.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 7.3e-16 89.7 321 33.0
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.6e-15 88.6 333 29.7
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.1e-15 88.2 180 37.8
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 3.6e-15 87.4 168 36.3
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 3.6e-15 87.4 190 42.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 4.7e-15 87.0 332 30.4
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 4.7e-15 87.0 181 33.1
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 8.1e-15 86.3 307 31.9
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 8.1e-15 86.3 307 31.9
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 8.1e-15 86.3 137 42.3
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.4e-14 85.5 157 42.0
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.8e-14 85.1 366 30.9
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.4e-14 84.7 339 31.0
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 3.1e-14 84.3 306 36.9
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 3.1e-14 84.3 162 47.5
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 5.2e-14 83.6 179 43.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 8.9e-14 82.8 259 38.6
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.5e-13 82.0 133 51.9
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.0e-13 81.6 338 30.2
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.6e-13 81.3 285 27.7
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 2.6e-13 81.3 336 29.5
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.6e-13 81.3 195 42.6
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 3.4e-13 80.9 328 30.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 3.4e-13 80.9 197 43.7
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.8e-13 80.1 285 27.7
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.6e-13 79.7 132 30.3
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 7.6e-13 79.7 182 31.9
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.9e-13 79.3 155 31.6
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.9e-13 79.3 329 28.0
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 9.9e-13 79.3 331 37.8
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.9e-12 77.8 311 30.2
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.9e-12 77.0 304 40.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.9e-12 77.0 174 29.3
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 8.4e-12 76.3 353 35.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 8.4e-12 76.3 166 36.1
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 1.1e-11 75.9 172 32.6
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 1.1e-11 75.9 326 26.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 3.2e-11 74.3 182 32.4
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.2e-11 73.9 307 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 7.1e-11 73.2 64 50.0
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.2e-10 72.4 178 30.9
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.2e-10 72.4 186 28.5
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.6e-10 72.0 154 39.6
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.6e-10 72.0 154 39.6
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.7e-10 71.2 194 27.3
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 6.0e-10 70.1 50 56.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 6.0e-10 70.1 54 51.9
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 1.3e-09 68.9 191 30.4
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 1.3e-09 68.9 56 48.2
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.7e-09 68.6 168 31.5
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.7e-09 68.6 152 36.2
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.0e-09 67.8 203 31.0
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 3.9e-09 67.4 177 31.6
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-09 67.4 177 31.6
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 3.9e-09 67.4 177 31.6
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 5.1e-09 67.0 203 31.0
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.1e-09 67.0 203 31.0
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 5.1e-09 67.0 160 41.9
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 6.6e-09 66.6 49 53.1
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 8.7e-09 66.2 191 29.8
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.1e-08 65.9 194 33.0
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.5e-08 65.5 50 50.0
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.9e-08 65.1 203 30.0
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 2.5e-08 64.7 172 27.3
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.5e-08 64.7 172 27.3
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.3e-08 64.3 46 56.5
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.3e-08 63.9 203 29.1
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.3e-08 63.2 184 26.6
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 7.3e-08 63.2 50 48.0
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 9.6e-08 62.8 195 27.7
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.3e-07 62.4 172 32.6
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.6e-07 62.0 44 56.8
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.1e-07 61.6 222 27.0
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 2.8e-07 61.2 50 54.0
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 4.8e-07 60.5 45 55.6
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 8.1e-07 59.7 189 29.6
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.1e-06 59.3 175 30.9
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 1.1e-06 59.3 68 39.7
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 1.4e-06 58.9 56 50.0
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 1.4e-06 58.9 56 50.0
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 2.4e-06 58.2 217 26.7
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 6.9e-06 56.6 57 49.1


User provided reference genes

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