Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.5e-242 840.9 433 100.0
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.3e-80 303.1 283 55.8
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 3.7e-79 299.7 284 54.9
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 9.4e-75 285.0 290 53.1
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 9.8e-72 275.0 284 47.5
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 9.1e-70 268.5 331 47.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 1.2e-69 268.1 317 48.9
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.7e-68 264.2 271 52.4
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.7e-68 264.2 228 58.8
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.7e-68 264.2 228 58.8
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.2e-68 263.8 228 58.8
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.2e-68 263.8 265 53.6
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.2e-68 263.8 228 58.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.5e-67 261.2 319 46.7
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.5e-67 260.4 295 50.2
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.2e-67 260.0 271 49.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.2e-67 260.0 225 59.1
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 5.5e-67 259.2 233 56.7
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.6e-66 257.7 299 44.1
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.6e-66 257.7 236 55.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 2.7e-66 256.9 286 48.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 3.6e-66 256.5 232 53.9
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 3.6e-66 256.5 280 46.4
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 6.1e-66 255.8 283 47.0
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 8.0e-66 255.4 261 50.6
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.0e-65 255.0 232 56.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.4e-65 254.6 264 51.1
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 3.0e-65 253.4 266 51.1
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.0e-65 253.4 291 47.8
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 4.0e-65 253.1 230 54.3
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 4.0e-65 253.1 228 54.4
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 6.8e-65 252.3 268 47.8
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 6.8e-65 252.3 292 48.6
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 6.8e-65 252.3 238 53.4
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 8.8e-65 251.9 232 53.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.2e-64 251.5 281 50.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.5e-64 251.1 233 53.2
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.5e-64 251.1 288 48.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.6e-64 250.4 233 53.6
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.4e-64 250.0 258 50.4
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 3.4e-64 250.0 229 58.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.4e-64 250.0 232 51.7
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 5.7e-64 249.2 232 55.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.7e-64 249.2 236 52.5
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 5.7e-64 249.2 190 63.2
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 7.5e-64 248.8 231 54.1
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 9.8e-64 248.4 262 49.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 9.8e-64 248.4 259 49.4
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 9.8e-64 248.4 233 52.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 9.8e-64 248.4 289 47.8
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.3e-63 248.1 228 54.8
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.7e-63 247.7 235 52.8
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 2.2e-63 247.3 233 53.6
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 2.2e-63 247.3 233 53.6
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.2e-63 247.3 265 50.9
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.8e-63 246.9 196 60.2
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 4.9e-63 246.1 233 53.6
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 4.9e-63 246.1 233 53.6
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.9e-63 246.1 230 53.5
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 6.3e-63 245.7 237 51.5
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 8.3e-63 245.4 317 43.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 8.3e-63 245.4 235 54.9
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.1e-62 245.0 269 49.4
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.1e-62 245.0 250 53.2
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.1e-62 245.0 230 54.8
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.4e-62 244.6 230 54.3
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.4e-62 244.6 228 56.1
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.4e-62 244.6 239 52.3
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.4e-62 244.6 240 51.7
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 1.8e-62 244.2 282 47.2
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.8e-62 244.2 235 53.2
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.8e-62 244.2 237 52.7
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.8e-62 244.2 258 50.4
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.4e-62 243.8 290 44.5
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.4e-62 243.8 230 54.3
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.1e-62 243.4 232 53.9
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.1e-62 243.4 284 47.2
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 4.1e-62 243.0 195 61.5
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 4.1e-62 243.0 232 54.7
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.1e-62 243.0 237 52.7
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.1e-62 243.0 231 51.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 5.4e-62 242.7 233 52.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 5.4e-62 242.7 232 53.4
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.4e-62 242.7 231 54.5
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 5.4e-62 242.7 230 54.3
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 7.0e-62 242.3 263 49.8
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 9.1e-62 241.9 330 42.7
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 9.1e-62 241.9 252 50.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-61 241.5 261 52.5
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.2e-61 241.5 232 55.2
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.6e-61 241.1 265 48.7
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 2.0e-61 240.7 230 52.2
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.0e-61 240.7 277 48.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.5e-61 240.0 259 49.4
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.5e-61 240.0 235 51.5
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 4.5e-61 239.6 233 53.6
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.5e-61 239.6 202 59.9
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 5.9e-61 239.2 272 47.8
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 7.7e-61 238.8 233 54.1
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 7.7e-61 238.8 256 49.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.0e-60 238.4 231 54.5
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.7e-60 237.7 393 41.7
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 2.3e-60 237.3 248 50.4
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 5.0e-60 236.1 238 52.9
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 6.6e-60 235.7 235 51.1
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 6.6e-60 235.7 258 48.1
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.5e-59 234.6 225 53.3
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.6e-58 231.1 303 44.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-58 231.1 267 49.4
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.8e-58 230.3 238 51.7
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 6.3e-55 219.2 243 48.1
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.4e-54 216.1 284 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 9.2e-54 215.3 258 46.1
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.7e-53 213.8 296 42.2
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.9e-52 209.9 368 37.0
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 4.7e-50 203.0 232 46.6
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 9.8e-48 195.3 163 55.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 2.7e-45 187.2 260 44.2
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 2.8e-42 177.2 226 44.7
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 9.8e-40 168.7 189 46.0
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 5.4e-30 136.3 354 33.6
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 4.4e-24 116.7 130 49.2
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 5.8e-24 116.3 158 42.4
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.2e-23 114.4 149 45.0
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 5.4e-14 83.2 52 71.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 2.1e-13 81.3 97 47.4
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-07 62.0 43 67.4


User provided reference genes

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