Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 5.3e-136 487.6 242 100.0
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 2.3e-86 322.8 234 72.6
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 5.8e-82 308.1 237 66.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 1.7e-81 306.6 241 65.6
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.8e-81 305.4 233 67.4
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.4e-80 303.5 245 62.9
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 4.2e-80 302.0 237 64.1
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 7.1e-80 301.2 237 64.1
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 9.3e-80 300.8 237 64.6
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 9.3e-80 300.8 234 64.5
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.6e-79 300.1 232 64.7
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.6e-79 300.1 234 64.5
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 2.1e-79 299.7 245 63.3
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 2.1e-79 299.7 232 65.1
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 3.5e-79 298.9 248 61.7
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 3.5e-79 298.9 236 66.5
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 4.6e-79 298.5 243 62.1
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.6e-79 298.5 247 62.8
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 6.0e-79 298.1 236 65.3
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 7.9e-79 297.7 233 64.8
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 7.9e-79 297.7 237 63.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.0e-78 297.4 232 63.8
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.7e-78 296.6 237 63.3
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 1.7e-78 296.6 233 65.7
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 2.3e-78 296.2 233 64.4
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 3.0e-78 295.8 237 64.6
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 3.0e-78 295.8 248 61.7
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 3.9e-78 295.4 233 64.4
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 3.9e-78 295.4 240 62.1
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.1e-78 295.0 247 61.9
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 5.1e-78 295.0 234 62.8
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 6.6e-78 294.7 242 62.4
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 6.6e-78 294.7 238 61.8
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 8.7e-78 294.3 234 63.7
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 8.7e-78 294.3 245 62.9
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 8.7e-78 294.3 249 63.1
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.1e-77 293.9 245 62.0
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.1e-77 293.9 233 63.9
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 1.5e-77 293.5 234 65.0
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.5e-77 293.5 233 65.7
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 1.9e-77 293.1 234 64.1
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 1.9e-77 293.1 234 65.0
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.9e-77 293.1 233 64.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 1.9e-77 293.1 235 65.1
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.5e-77 292.7 233 63.5
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.5e-77 292.7 234 63.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.3e-77 292.4 233 63.5
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 4.3e-77 292.0 233 64.4
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 4.3e-77 292.0 241 62.2
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 5.6e-77 291.6 233 63.9
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 9.6e-77 290.8 225 64.4
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 9.6e-77 290.8 234 64.1
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.3e-76 290.4 234 64.1
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.3e-76 290.4 237 63.3
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.6e-76 290.0 233 63.9
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.6e-76 290.0 233 62.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 2.1e-76 289.7 244 61.9
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 2.1e-76 289.7 234 64.1
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.8e-76 289.3 245 62.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.8e-76 289.3 244 61.5
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 3.6e-76 288.9 235 63.8
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 4.8e-76 288.5 237 60.8
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 8.1e-76 287.7 234 63.7
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.1e-75 287.3 218 65.6
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.8e-75 286.6 233 62.2
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 2.4e-75 286.2 234 63.7
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 2.4e-75 286.2 231 63.6
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.1e-75 285.8 233 64.8
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 4.0e-75 285.4 218 66.5
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 4.0e-75 285.4 244 60.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 9.0e-75 284.3 240 61.2
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.2e-74 283.9 233 63.1
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 2.0e-74 283.1 233 63.5
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 2.6e-74 282.7 234 63.2
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 3.4e-74 282.3 233 63.1
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 4.5e-74 282.0 265 57.4
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 7.6e-74 281.2 239 60.3
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 7.6e-74 281.2 233 62.7
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 9.9e-74 280.8 234 61.1
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 1.3e-73 280.4 268 56.7
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.7e-73 280.0 239 62.3
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.8e-73 278.9 258 57.4
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 3.8e-73 278.9 233 62.7
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.4e-72 276.9 237 62.0
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.4e-72 276.9 234 62.4
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.4e-72 276.2 233 60.5
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 5.4e-72 275.0 233 58.8
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.0e-70 270.8 233 59.7
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.5e-69 266.9 233 58.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 2.5e-69 266.2 284 51.8
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.3e-69 265.8 233 56.7
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 2.1e-68 263.1 249 57.4
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.8e-68 262.7 233 55.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 3.7e-68 262.3 250 58.0
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.8e-68 261.9 233 55.4
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.1e-67 260.8 233 56.7
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 4.0e-67 258.8 255 54.9
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 6.9e-67 258.1 240 57.5
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 1.2e-66 257.3 258 54.3
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.6e-66 256.1 219 58.4
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 4.5e-66 255.4 222 55.9
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.9e-65 252.7 232 55.2
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 4.9e-65 251.9 233 54.9
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 6.0e-63 245.0 222 54.1
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.0e-62 244.2 223 55.6
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 1.8e-62 243.4 234 52.6
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 2.3e-62 243.0 219 54.3
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 3.0e-62 242.7 218 55.0
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 8.7e-62 241.1 216 54.2
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.6e-60 236.9 235 51.9
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 5.3e-59 231.9 222 57.7
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.6e-58 229.6 247 53.0
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 1.4e-56 223.8 237 51.9
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 6.1e-55 218.4 193 58.0
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 8.2e-52 208.0 278 45.0
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.5e-50 203.8 222 50.0
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 3.4e-50 202.6 232 50.4
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.0e-49 201.1 167 59.9
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.0e-49 201.1 233 48.9
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.6e-47 192.2 233 47.6
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 3.9e-46 189.1 181 51.4
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 5.1e-46 188.7 152 65.1
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 1.1e-45 187.6 243 45.7
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.0e-45 186.8 162 62.3
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.9e-40 170.2 244 44.7
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 7.2e-40 168.3 209 47.4
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.2e-40 168.3 181 50.8
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.2e-39 167.5 150 59.3
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.6e-39 167.2 227 47.6
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 8.2e-36 154.8 196 44.9
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 6.7e-30 135.2 134 56.0
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 8.2e-28 128.3 120 50.8
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.6e-26 124.0 114 55.3
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 1.6e-26 124.0 122 52.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.5e-24 117.5 99 59.6
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.4e-22 110.9 124 56.5
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 6.8e-22 108.6 131 48.1
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 1.2e-18 97.8 73 67.1
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 7.7e-18 95.1 247 33.6
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.4e-11 74.3 69 56.5
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.8e-09 66.2 86 52.3
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.9e-08 63.9 86 44.2
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.6e-07 59.7 50 56.0
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.7e-07 59.3 66 54.5


User provided reference genes

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