Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.5e-189 666.0 330 100.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.3e-137 493.4 324 75.0
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 9.9e-133 477.2 323 70.6
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 5.4e-131 471.5 325 71.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.2e-130 470.3 320 72.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.1e-130 469.5 329 71.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.1e-130 469.5 316 73.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 4.6e-130 468.4 329 69.6
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.7e-129 466.5 321 70.1
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 5.1e-129 464.9 324 69.1
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.9e-128 463.0 328 68.0
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.9e-128 463.0 324 69.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.3e-128 462.2 331 68.3
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.3e-128 462.2 327 69.1
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.3e-128 461.8 329 68.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 7.3e-128 461.1 311 73.3
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 9.5e-128 460.7 331 70.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 9.5e-128 460.7 316 71.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.1e-127 459.5 309 71.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.6e-127 458.8 329 68.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 6.2e-127 458.0 319 68.0
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 6.2e-127 458.0 329 68.4
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 8.1e-127 457.6 327 67.6
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.1e-126 457.2 319 69.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.4e-126 456.8 320 69.1
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.4e-126 456.8 323 68.4
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.4e-126 456.1 333 68.2
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.4e-126 456.1 319 69.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.4e-126 456.1 325 69.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.1e-126 455.7 331 67.7
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.0e-126 455.3 325 69.8
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.2e-126 454.9 331 67.7
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.2e-126 454.9 324 69.4
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.2e-126 454.9 323 68.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 6.8e-126 454.5 325 68.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 6.8e-126 454.5 319 69.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 8.9e-126 454.1 323 68.4
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.2e-125 453.8 323 67.8
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.5e-125 453.4 312 69.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.6e-125 452.6 335 66.9
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.6e-125 452.6 309 71.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 3.4e-125 452.2 332 67.8
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 3.4e-125 452.2 323 68.7
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 5.8e-125 451.4 321 69.2
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 5.8e-125 451.4 335 66.9
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 5.8e-125 451.4 327 66.7
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 7.6e-125 451.1 332 67.5
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 7.6e-125 451.1 332 67.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 7.6e-125 451.1 328 68.0
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.3e-124 450.3 320 68.1
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.9e-124 449.1 315 68.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.9e-124 448.4 325 67.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 6.4e-124 448.0 331 66.8
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 8.4e-124 447.6 311 71.1
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 8.4e-124 447.6 328 67.4
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-123 447.2 361 62.6
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.2e-123 445.7 331 66.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 7.1e-123 444.5 332 66.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 9.2e-123 444.1 312 68.9
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.6e-122 443.4 329 66.9
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.6e-122 443.4 328 66.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.7e-122 442.6 321 67.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-122 442.6 321 67.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.7e-122 442.6 332 65.4
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.5e-122 442.2 322 66.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.0e-122 441.4 330 65.5
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 6.0e-122 441.4 322 66.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 7.8e-122 441.0 323 66.3
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.0e-121 440.7 331 66.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.3e-121 440.3 320 66.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.3e-121 439.5 320 66.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.3e-121 439.5 305 69.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.5e-120 436.8 317 66.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.5e-120 436.0 323 65.6
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.5e-120 436.0 325 66.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 3.3e-120 435.6 325 66.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.3e-120 435.6 313 69.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.6e-120 434.9 343 63.3
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 9.6e-120 434.1 369 60.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 9.6e-120 434.1 315 67.6
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.3e-119 433.7 322 64.9
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 6.2e-119 431.4 315 67.3
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-118 430.6 322 65.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.4e-118 429.5 364 59.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.1e-118 429.1 316 65.5
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.3e-118 428.3 300 70.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-117 426.4 343 62.7
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 2.0e-117 426.4 363 59.2
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.6e-117 424.5 320 66.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.7e-116 423.3 323 63.5
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.9e-116 421.8 315 65.4
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.4e-115 419.5 327 64.2
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.9e-113 412.1 329 64.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.3e-112 409.1 310 65.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.8e-111 406.0 398 56.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.8e-111 405.2 332 63.3
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.4e-110 403.7 330 60.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.6e-109 399.4 327 60.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.1e-98 363.2 319 58.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.1e-98 363.2 242 70.2
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 5.1e-97 358.6 242 70.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.5e-96 357.1 235 71.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.3e-96 355.9 309 59.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.6e-95 353.6 242 68.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.4e-94 349.7 235 69.8
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.0e-93 346.7 330 57.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.8e-93 345.1 325 58.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 5.5e-91 338.6 235 66.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.2e-90 337.4 371 51.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.3e-88 329.3 323 53.6
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 2.6e-77 293.1 193 70.5
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.8e-73 280.4 232 59.1
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 1.8e-73 280.4 325 44.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.0e-68 262.3 265 49.8
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.2e-67 259.6 176 72.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 3.9e-65 252.7 334 43.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 3.7e-63 246.1 204 60.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-60 237.7 215 57.7
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.6e-50 203.0 127 74.0
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 2.3e-49 200.3 131 70.2
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.7e-47 193.0 124 75.8
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.9e-33 145.2 134 56.7
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.6e-32 143.7 134 56.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 9.8e-32 141.7 104 68.3
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-32 141.7 162 43.2
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-31 139.8 136 53.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 4.9e-31 139.4 114 59.6
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.6e-29 132.9 127 55.1
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.6e-29 132.9 127 55.1
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.3e-28 130.6 127 54.3
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-25 121.3 208 39.9
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 4.0e-25 119.8 101 57.4
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 6.0e-21 105.9 73 65.8
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.6e-18 96.7 70 65.7
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.8e-17 94.4 68 67.6
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.0e-17 93.2 101 51.5
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 7.6e-16 89.0 78 61.5
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.9e-14 84.3 71 64.8
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.2e-14 83.6 160 36.2
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 6.6e-12 75.9 56 67.9
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.1e-11 75.1 73 60.3
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-11 74.7 61 59.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.6e-10 70.1 65 53.8
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 8.1e-10 68.9 51 60.8
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 6.8e-09 65.9 93 47.3
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 7.6e-08 62.4 63 49.2
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 7.6e-08 62.4 53 58.5
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 9.3e-06 55.5 164 28.0
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 9.3e-06 55.5 161 27.3


User provided reference genes

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