Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.6e-137 491.5 236 100.0
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.1e-72 274.2 204 67.6
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.4e-67 260.4 196 67.9
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.7e-66 255.0 197 66.0
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.2e-61 239.2 198 62.1
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.4e-61 237.7 196 61.7
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.6e-60 236.9 190 61.6
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.1e-60 236.5 196 61.2
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.1e-60 235.0 196 61.7
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-59 231.1 196 62.2
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-33 147.5 190 38.4
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.9e-33 145.6 188 38.8
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.9e-29 133.7 213 36.6
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.6e-29 132.1 113 62.8
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.3e-29 131.7 190 38.4
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.8e-26 121.3 185 38.4
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.1e-24 117.9 85 67.1
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.6e-23 114.0 243 30.5
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.7e-22 110.5 177 38.4
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-21 107.1 175 36.0
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.3e-21 106.3 220 32.3
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.1e-19 101.3 166 38.0
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.0e-19 99.4 214 30.4
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.0e-18 97.1 221 33.0
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.4e-18 96.3 164 37.2
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 3.4e-18 96.3 163 35.6
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 7.5e-18 95.1 160 36.2
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.5e-18 95.1 169 36.1
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 9.8e-18 94.7 175 34.3
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.4e-16 90.1 180 33.3
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 4.1e-16 89.4 202 29.2
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.6e-15 87.4 229 29.3
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 1.6e-15 87.4 231 28.6
Mapoly0032s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.1e-15 87.0 172 32.0
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 3.5e-15 86.3 182 30.2
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 4.6e-15 85.9 203 30.0
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 4.6e-15 85.9 158 36.1
Mapoly0120s0017 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.0e-15 85.5 212 32.1
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.0e-14 84.7 225 27.6
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.7e-14 84.0 203 28.6
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.3e-14 83.6 152 33.6
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.3e-14 83.6 211 27.5
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 5.1e-14 82.4 152 35.5
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 6.6e-14 82.0 163 32.5
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 6.6e-14 82.0 152 35.5
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 6.6e-14 82.0 152 35.5
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 8.6e-14 81.6 198 28.3
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 1.1e-13 81.3 152 34.9
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.1e-13 81.3 214 27.6
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 1.5e-13 80.9 178 29.2
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 2.5e-13 80.1 210 28.6
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.5e-13 80.1 167 30.5
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 4.3e-13 79.3 199 29.6
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 4.3e-13 79.3 152 32.9
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 4.3e-13 79.3 164 33.5
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 4.3e-13 79.3 152 32.9
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 5.6e-13 79.0 152 33.6
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 7.3e-13 78.6 152 32.9
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 7.3e-13 78.6 152 30.9
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 7.3e-13 78.6 153 34.0
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 9.5e-13 78.2 152 30.9
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 1.2e-12 77.8 151 31.8
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.2e-12 77.8 152 32.2
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 1.2e-12 77.8 174 31.6
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 1.2e-12 77.8 167 30.5
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 1.2e-12 77.8 152 32.2
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.6e-12 77.4 155 34.2
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 2.1e-12 77.0 162 32.7
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 2.1e-12 77.0 162 32.7
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 2.8e-12 76.6 168 29.8
Mapoly0116s0050 Marchantia polymorpha HOM05D011080 ORTHO05D252286 2.8e-12 76.6 151 29.8
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 4.7e-12 75.9 160 32.5
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 6.2e-12 75.5 152 32.2
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 6.2e-12 75.5 152 32.2
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 6.2e-12 75.5 180 29.4
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 8.1e-12 75.1 166 31.3
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 1.1e-11 74.7 152 30.9
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 1.1e-11 74.7 152 30.9
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.1e-11 74.7 152 28.9
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 1.1e-11 74.7 152 31.6
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 1.4e-11 74.3 160 32.5
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 1.4e-11 74.3 153 29.4
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 1.4e-11 74.3 163 31.3
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 1.4e-11 74.3 152 31.6
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 1.8e-11 73.9 170 28.8
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 1.8e-11 73.9 154 29.2
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 1.8e-11 73.9 152 32.9
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 1.8e-11 73.9 154 30.5
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 2.3e-11 73.6 153 29.4
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 2.3e-11 73.6 187 29.9
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 2.3e-11 73.6 180 27.2
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 3.1e-11 73.2 152 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 4.0e-11 72.8 154 29.9
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 4.0e-11 72.8 151 30.5
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 4.0e-11 72.8 155 31.0
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 4.0e-11 72.8 152 32.9
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 4.0e-11 72.8 152 31.6
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 4.0e-11 72.8 154 32.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 5.2e-11 72.4 152 32.2
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.2e-11 72.4 152 32.9
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 6.8e-11 72.0 170 28.2
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 6.8e-11 72.0 212 25.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 6.8e-11 72.0 187 27.3
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 6.8e-11 72.0 153 29.4
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 6.8e-11 72.0 152 32.9
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 6.8e-11 72.0 151 29.8
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 6.8e-11 72.0 153 30.1
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 8.9e-11 71.6 151 29.8
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 8.9e-11 71.6 151 29.8
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 8.9e-11 71.6 152 30.3
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 8.9e-11 71.6 155 30.3
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 1.2e-10 71.2 151 30.5
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 1.2e-10 71.2 151 30.5
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 1.2e-10 71.2 152 31.6
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 1.2e-10 71.2 155 31.0
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 1.2e-10 71.2 155 31.0
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 1.2e-10 71.2 152 31.6
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 1.2e-10 71.2 172 29.1
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 2.6e-10 70.1 151 31.1
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 2.6e-10 70.1 151 29.8
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 2.6e-10 70.1 151 29.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 3.4e-10 69.7 191 27.7
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 3.4e-10 69.7 170 28.2
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 3.4e-10 69.7 187 27.8
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 3.4e-10 69.7 108 32.4
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 3.4e-10 69.7 124 33.9
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 4.4e-10 69.3 155 29.0
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 5.8e-10 68.9 152 30.9
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 5.8e-10 68.9 151 30.5
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 5.8e-10 68.9 152 30.9
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 5.8e-10 68.9 179 29.1
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 5.8e-10 68.9 152 32.9
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 5.8e-10 68.9 165 30.3
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 5.8e-10 68.9 188 27.1
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 9.9e-10 68.2 155 29.7
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.7e-09 67.4 151 32.5
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 2.2e-09 67.0 152 28.9
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 2.2e-09 67.0 155 29.7
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 3.7e-09 66.2 152 27.0
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 3.7e-09 66.2 211 29.4
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 3.7e-09 66.2 152 28.9
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 6.4e-09 65.5 152 28.3
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 8.4e-09 65.1 154 27.3
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 1.1e-08 64.7 120 35.0
Mapoly0120s0043 Marchantia polymorpha HOM05D011080 ORTHO05D255325 1.9e-08 63.9 181 28.7
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 2.4e-08 63.5 168 29.2
Mapoly0062s0119 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.6e-07 60.8 109 41.3
Pp3c2_1120 Physcomitrium patens HOM05D002195 ORTHO05D317592 2.7e-07 60.1 181 27.1
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 2.7e-07 60.1 167 27.5
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 4.6e-07 59.3 110 29.1


User provided reference genes

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