Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.4e-81 306.2 153 100.0
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 3.6e-53 211.8 142 69.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 6.1e-53 211.1 144 67.4
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.3e-50 203.4 149 65.1
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 6.3e-50 201.1 143 67.8
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 8.3e-50 200.7 149 65.8
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 8.3e-50 200.7 144 63.9
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 8.3e-50 200.7 149 63.8
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.1e-49 200.3 149 65.8
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.1e-49 200.3 149 64.4
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.1e-49 200.3 149 64.4
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.4e-49 199.9 148 66.9
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.4e-49 199.9 149 64.4
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.4e-49 199.9 144 63.9
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.4e-49 199.9 149 65.8
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 1.8e-49 199.5 149 64.4
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.4e-49 199.1 140 65.0
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.4e-49 199.1 149 65.1
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.4e-49 199.1 148 64.9
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 3.1e-49 198.7 149 65.8
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.1e-49 198.7 142 68.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.1e-49 198.4 149 65.1
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.1e-49 198.4 142 68.3
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 5.4e-49 198.0 151 62.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.4e-49 198.0 147 61.2
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 5.4e-49 198.0 148 66.2
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 9.1e-49 197.2 149 64.4
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 9.1e-49 197.2 149 63.1
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.2e-48 196.8 149 66.4
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.2e-48 196.8 149 64.4
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.0e-48 196.1 147 63.3
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.0e-48 196.1 149 63.8
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.7e-48 195.7 154 62.3
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.7e-48 195.7 149 64.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.7e-48 195.7 149 64.4
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.7e-48 195.7 148 64.9
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 2.7e-48 195.7 148 66.9
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.7e-48 195.7 151 63.6
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.7e-48 195.7 150 63.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 3.5e-48 195.3 148 64.2
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 3.5e-48 195.3 143 66.4
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 3.5e-48 195.3 149 65.1
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.5e-48 195.3 147 65.3
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 3.5e-48 195.3 148 65.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.5e-48 195.3 150 63.3
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.5e-48 194.9 147 61.2
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 4.5e-48 194.9 153 60.8
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.5e-48 194.9 149 64.4
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.5e-48 194.9 149 64.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 4.5e-48 194.9 148 64.9
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 5.9e-48 194.5 149 61.7
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 5.9e-48 194.5 149 63.1
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 5.9e-48 194.5 149 64.4
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 5.9e-48 194.5 149 63.8
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 7.7e-48 194.1 149 63.1
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 7.7e-48 194.1 149 63.1
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 7.7e-48 194.1 148 66.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 7.7e-48 194.1 151 62.9
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 7.7e-48 194.1 149 63.1
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.0e-47 193.7 149 64.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.0e-47 193.7 149 65.1
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.9e-47 192.2 149 62.4
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 2.9e-47 192.2 148 65.5
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.8e-47 191.8 147 62.6
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 3.8e-47 191.8 149 63.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 3.8e-47 191.8 148 65.5
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 3.8e-47 191.8 149 63.8
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 3.8e-47 191.8 149 64.4
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 5.0e-47 191.4 149 63.1
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 5.0e-47 191.4 149 64.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 5.0e-47 191.4 149 61.7
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 5.0e-47 191.4 149 63.8
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 5.0e-47 191.4 142 65.5
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 5.0e-47 191.4 151 60.3
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 5.0e-47 191.4 153 62.7
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 6.5e-47 191.0 142 65.5
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.5e-47 191.0 149 63.1
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 8.5e-47 190.7 149 61.7
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 8.5e-47 190.7 149 61.7
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 8.5e-47 190.7 149 61.7
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 8.5e-47 190.7 143 65.7
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.1e-46 190.3 149 63.1
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.1e-46 190.3 149 63.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.5e-46 189.9 147 59.9
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 1.5e-46 189.9 149 62.4
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.5e-46 189.9 149 61.1
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.5e-46 189.9 149 61.1
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.5e-46 189.9 142 64.1
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.9e-46 189.5 149 61.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.9e-46 189.5 145 63.4
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.9e-46 189.5 149 61.7
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.5e-46 189.1 149 59.1
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.5e-46 189.1 143 63.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.5e-46 189.1 145 64.1
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 3.2e-46 188.7 149 61.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 3.2e-46 188.7 148 62.2
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.2e-46 188.3 149 61.1
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 4.2e-46 188.3 148 63.5
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 4.2e-46 188.3 149 61.1
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 4.2e-46 188.3 144 62.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 5.5e-46 188.0 151 61.6
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 5.5e-46 188.0 147 63.3
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 7.2e-46 187.6 149 59.7
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 9.4e-46 187.2 149 61.1
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 3.6e-45 185.3 151 58.9
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 3.6e-45 185.3 143 60.8
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 4.7e-45 184.9 148 61.5
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 6.8e-44 181.0 145 62.1
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.7e-42 176.4 123 66.7
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.6e-40 169.9 150 57.3
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.0e-39 167.2 145 58.6
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.9e-38 162.9 139 53.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.6e-37 159.8 151 53.0
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.3e-36 156.0 141 53.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 4.4e-35 151.8 149 54.4
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.4e-33 146.0 140 48.6
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.0e-32 142.9 116 62.1
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.6e-32 141.7 115 61.7
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 3.3e-30 135.6 88 72.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 3.3e-30 135.6 133 52.6
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.8e-29 132.5 88 68.2
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 4.0e-28 128.6 147 49.7
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 7.0e-25 117.9 180 38.3
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 2.5e-22 109.4 84 65.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 2.1e-21 106.3 59 79.7
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 6.8e-20 101.3 94 56.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.9e-18 95.9 111 42.3
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 9.2e-17 90.9 57 70.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.7e-15 86.7 132 38.6
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 2.3e-15 86.3 149 38.9
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 2.3e-15 86.3 149 38.9
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 5.1e-15 85.1 47 76.6
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 9.9e-11 70.9 132 33.3
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 9.9e-11 70.9 132 33.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.6e-08 63.5 61 50.8
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.0e-08 61.6 54 51.9


User provided reference genes

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