Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 9.8e-40 166.4 87 100.0
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 1.2e-24 116.3 84 73.8
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 1.2e-18 96.3 77 63.6
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 1.1e-14 83.2 66 63.6
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 2.4e-14 82.0 69 60.9
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.4e-14 82.0 69 60.9
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.4e-14 82.0 69 60.9
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.4e-14 82.0 69 60.9
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.4e-14 82.0 69 60.9
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 4.2e-14 81.3 71 56.3
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 5.4e-14 80.9 77 61.0
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 5.4e-14 80.9 65 60.0
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 1.2e-13 79.7 65 58.5
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 2.1e-13 79.0 70 60.0
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 2.1e-13 79.0 70 60.0
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 2.7e-13 78.6 65 58.5
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.7e-13 78.6 65 63.1
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 2.7e-13 78.6 66 57.6
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 3.5e-13 78.2 66 57.6
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 3.5e-13 78.2 65 64.6
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 4.6e-13 77.8 73 60.3
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 6.0e-13 77.4 70 58.6
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 7.8e-13 77.0 66 57.6
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 7.8e-13 77.0 67 53.7
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 7.8e-13 77.0 65 56.9
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 1.0e-12 76.6 69 56.5
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 1.3e-12 76.3 71 54.9
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 1.7e-12 75.9 65 61.5
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 1.7e-12 75.9 65 52.3
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 1.7e-12 75.9 65 61.5
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 1.7e-12 75.9 61 62.3
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 2.3e-12 75.5 67 62.7
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 2.3e-12 75.5 69 53.6
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 3.0e-12 75.1 65 55.4
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.0e-12 75.1 65 55.4
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 3.0e-12 75.1 73 56.2
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 3.9e-12 74.7 63 55.6
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 5.1e-12 74.3 63 57.1
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 5.1e-12 74.3 73 54.8
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 6.6e-12 73.9 65 53.8
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 8.7e-12 73.6 67 58.2
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 8.7e-12 73.6 80 56.2
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 8.7e-12 73.6 65 53.8
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.1e-11 73.2 69 52.2
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 1.5e-11 72.8 69 55.1
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 1.9e-11 72.4 73 54.8
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 2.5e-11 72.0 70 51.4
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 2.5e-11 72.0 65 53.8
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 3.3e-11 71.6 65 53.8
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 3.3e-11 71.6 69 53.6
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 4.3e-11 71.2 69 52.2
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 4.3e-11 71.2 69 52.2
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 4.3e-11 71.2 63 55.6
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 5.6e-11 70.9 65 52.3
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 5.6e-11 70.9 69 53.6
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 5.6e-11 70.9 69 52.2
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 5.6e-11 70.9 69 53.6
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 7.3e-11 70.5 69 53.6
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 7.3e-11 70.5 69 55.1
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 1.3e-10 69.7 87 47.1
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.6e-10 69.3 67 52.2
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 1.6e-10 69.3 65 52.3
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 2.1e-10 68.9 69 52.2
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 2.1e-10 68.9 69 52.2
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 2.8e-10 68.6 65 52.3
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 2.8e-10 68.6 69 50.7
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 2.8e-10 68.6 69 52.2
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.8e-10 68.6 73 52.1
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 3.6e-10 68.2 77 46.8
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 3.6e-10 68.2 77 46.8
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 3.6e-10 68.2 73 50.7
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 4.8e-10 67.8 65 46.2
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 4.8e-10 67.8 65 53.8
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 6.2e-10 67.4 69 50.7
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 6.2e-10 67.4 65 50.8
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 6.2e-10 67.4 67 50.7
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 8.1e-10 67.0 67 46.3
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 8.1e-10 67.0 75 46.7
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 8.1e-10 67.0 75 46.7
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 1.1e-09 66.6 61 52.5
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 1.4e-09 66.2 65 50.8
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 1.4e-09 66.2 65 52.3
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 1.4e-09 66.2 65 49.2
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 1.8e-09 65.9 61 52.5
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 1.8e-09 65.9 61 54.1
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 3.1e-09 65.1 69 49.3
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 3.1e-09 65.1 61 54.1
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 5.3e-09 64.3 70 51.4
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 6.9e-09 63.9 64 46.9
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 2.0e-08 62.4 61 45.9
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 4.4e-08 61.2 42 64.3
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 5.8e-08 60.8 49 67.3
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 3.8e-07 58.2 58 48.3
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 8.4e-07 57.0 43 62.8
SEGI_24291 Sequoiadendron giganteum HOM05D007530 ORTHO05D386186 9.3e-06 53.5 43 55.8


User provided reference genes

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